Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09230 Coffea canephora HOM05D003116 ORTHO05D003619 2.7e-29 131.3 67 100.0
Hund07322 Selenicereus undatus HOM05D003116 ORTHO05D003619 1.2e-21 105.9 61 86.9
Peaxi162Scf00135g01111 Petunia axillaris HOM05D003116 ORTHO05D003619 1.6e-21 105.5 61 86.9
Duzib128G0562 Durio zibethinus HOM05D003116 ORTHO05D003619 2.1e-21 105.1 61 85.2
CSS0019916 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 4.6e-21 104.0 61 86.9
Oeu033264.1 Olea europaea HOM05D003116 ORTHO05D003619 4.6e-21 104.0 61 86.9
Thecc.05G204800 Theobroma cacao HOM05D003116 ORTHO05D003619 4.6e-21 104.0 61 85.2
Nn3g20158 Nelumbo nucifera HOM05D003116 ORTHO05D003619 6.0e-21 103.6 61 85.2
DCAR_014783 Daucus carota HOM05D003116 ORTHO05D003619 7.9e-21 103.2 61 85.2
Duzib177G0648 Durio zibethinus HOM05D003116 ORTHO05D003619 1.0e-20 102.8 60 83.3
CAN.G186.68 Capsicum annuum HOM05D003116 ORTHO05D003619 1.3e-20 102.4 61 83.6
Lalb_Chr06g0168431 Lupinus albus HOM05D003116 ORTHO05D003619 1.3e-20 102.4 61 82.0
Prupe.6G358700 Prunus persica HOM05D003116 ORTHO05D003619 1.3e-20 102.4 61 80.3
PGSC0003DMG400025436 Solanum tuberosum HOM05D003116 ORTHO05D003619 1.3e-20 102.4 61 83.6
GSVIVG01019146001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.3e-20 102.4 61 83.6
Nitab4.5_0007901g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.3e-20 101.7 61 83.6
Nitab4.5_0009004g0010 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.3e-20 101.7 61 83.6
Solyc04g009810.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 2.3e-20 101.7 61 83.6
Sopen04g004940 Solanum pennellii HOM05D003116 ORTHO05D003619 2.3e-20 101.7 61 83.6
TWI14G0774 Tripterygium wilfordii HOM05D003116 ORTHO05D003619 2.3e-20 101.7 61 80.3
ATR0609G064 Amborella trichopoda HOM05D003116 ORTHO05D003619 3.0e-20 101.3 61 78.7
MSTRG.9020 Avicennia marina HOM05D003116 ORTHO05D003619 3.0e-20 101.3 61 82.0
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla HOM05D003116 ORTHO05D003619 3.0e-20 101.3 61 83.6
MD04G1241200 Malus domestica HOM05D003116 ORTHO05D003619 3.0e-20 101.3 61 78.7
PGR119G1776 Punica granatum HOM05D003116 ORTHO05D003619 3.0e-20 101.3 61 78.7
vmacro10396 Vaccinium macrocarpon HOM05D003116 ORTHO05D003619 3.0e-20 101.3 61 82.0
Actinidia38911 Actinidia chinensis HOM05D003116 ORTHO05D003619 3.9e-20 100.9 61 82.0
Migut.F01553 Erythranthe guttata HOM05D003116 ORTHO05D003619 3.9e-20 100.9 61 80.3
Manes.08G104900 Manihot esculenta HOM05D003116 ORTHO05D003619 3.9e-20 100.9 61 83.6
Lj5g0010554 Lotus japonicus HOM05D003116 ORTHO05D003619 5.1e-20 100.5 61 78.7
Sp7g25620 Schrenkiella parvula HOM05D003116 ORTHO05D003619 5.1e-20 100.5 61 78.7
BcaNung01649 Brassica carinata HOM05D003116 ORTHO05D003619 6.7e-20 100.1 61 78.7
CARHR235350 Cardamine hirsuta HOM05D003116 ORTHO05D003619 6.7e-20 100.1 61 78.7
Gohir.A08G224000 Gossypium hirsutum HOM05D003116 ORTHO05D003619 6.7e-20 100.1 61 82.0
HPP92_011793 Vanilla planifolia HOM05D003116 ORTHO05D003619 6.7e-20 100.1 61 82.0
Gohir.D08G244300 Gossypium hirsutum HOM05D003116 ORTHO05D003619 8.7e-20 99.8 61 82.0
Gorai.004G260600 Gossypium raimondii HOM05D003116 ORTHO05D003619 8.7e-20 99.8 61 82.0
SGA_v2.0_scaffold7G04085 Striga asiatica HOM05D003116 ORTHO05D003619 8.7e-20 99.8 61 82.0
Glyma.10G170200 Glycine max HOM05D003116 ORTHO05D003619 1.1e-19 99.4 61 78.7
Glyma.20G219800 Glycine max HOM05D003116 ORTHO05D003619 1.1e-19 99.4 61 78.7
Lj7C705G3 Lonicera japonica HOM05D003116 ORTHO05D003619 1.1e-19 99.4 61 82.0
THA.LOC104821795 Tarenaya hassleriana HOM05D003116 ORTHO05D003619 1.1e-19 99.4 61 82.0
VMungo0720G2849 Vigna mungo HOM05D003116 ORTHO05D003619 1.1e-19 99.4 61 78.7
EL10Ac4g09413 Beta vulgaris HOM05D003116 ORTHO05D003619 1.5e-19 99.0 61 80.3
ECA233G1402 Erigeron canadensis HOM05D003116 ORTHO05D003619 1.5e-19 99.0 61 75.4
Atru.chr12.2147 Acer truncatum HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 75.4
BcaC06g32676 Brassica carinata HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
A03p57410 Brassica napus HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
C07p55620 Brassica napus HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
BolC7t46042H Brassica oleracea HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
BraA03t14807Z Brassica rapa HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
MELO3C008594.2 Cucumis melo HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 78.7
Eucgr.B01382 Eucalyptus grandis HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
Eucgr.B01384 Eucalyptus grandis HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 77.0
TAR636G1363 Trochodendron aralioides HOM05D003116 ORTHO05D003619 1.9e-19 98.6 61 78.7
Thhalv10025473m.g Eutrema salsugineum HOM05D003116 ORTHO05D003619 2.5e-19 98.2 61 75.4
AL7G25070 Arabidopsis lyrata HOM05D003116 ORTHO05D003619 3.3e-19 97.8 61 75.4
AT4G27650 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 3.3e-19 97.8 61 75.4
HanXRQChr05g0156871 Helianthus annuus HOM05D003116 ORTHO05D003619 3.3e-19 97.8 61 75.4
Rhsim09G0131200 Rhododendron simsii HOM05D003116 ORTHO05D003619 3.3e-19 97.8 61 78.7
Aa31LG7G11540 Aethionema arabicum HOM05D003116 ORTHO05D003619 4.3e-19 97.4 61 77.0
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea HOM05D003116 ORTHO05D003619 5.6e-19 97.1 61 77.0
AUR62000365 Chenopodium quinoa HOM05D003116 ORTHO05D003619 5.6e-19 97.1 61 77.0
Lsat_1_v5_gn_8_2981 Lactuca sativa HOM05D003116 ORTHO05D003619 5.6e-19 97.1 60 76.7
Phvul.010G077790 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 5.6e-19 97.1 61 77.0
TAR636G1994 Trochodendron aralioides HOM05D003116 ORTHO05D003619 5.6e-19 97.1 61 77.0
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 7.4e-19 96.7 60 80.0
Sabra05G0155200 Salix brachista HOM05D003116 ORTHO05D003619 7.4e-19 96.7 61 77.0
TAR636G1518 Trochodendron aralioides HOM05D003116 ORTHO05D003619 7.4e-19 96.7 61 77.0
ATR0743G097 Amborella trichopoda HOM05D003116 ORTHO05D003619 9.6e-19 96.3 61 73.8
Carub.0007s1320 Capsella rubella HOM05D003116 ORTHO05D003619 9.6e-19 96.3 61 75.4
ClCG11G007480 Citrullus lanatus HOM05D003116 ORTHO05D003619 9.6e-19 96.3 61 77.0
QL05p031548 Quercus lobata HOM05D003116 ORTHO05D003619 9.6e-19 96.3 59 78.0
TAR636G0211 Trochodendron aralioides HOM05D003116 ORTHO05D003619 9.6e-19 96.3 61 75.4
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea HOM05D003116 ORTHO05D003619 1.3e-18 95.9 61 75.4
CANSAT54G1522 Cannabis sativa HOM05D003116 ORTHO05D003619 1.3e-18 95.9 61 73.8
AUR62036544 Chenopodium quinoa HOM05D003116 ORTHO05D003619 1.3e-18 95.9 61 75.4
MBI11_g04280_MAGBIO Magnolia biondii HOM05D003116 ORTHO05D003619 1.3e-18 95.9 61 78.7
Os04g0659900 Oryza sativa ssp. japonica HOM05D003116 ORTHO05D003619 1.3e-18 95.9 61 78.7
RcHm_v2.0_Chr3g0448271 Rosa chinensis HOM05D003116 ORTHO05D003619 1.3e-18 95.9 61 75.4
Ah.13g070600 Amaranthus hybridus HOM05D003116 ORTHO05D003619 2.1e-18 95.1 61 75.4
AUR62006711 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.1e-18 95.1 61 75.4
AUR62006712 Chenopodium quinoa HOM05D003116 ORTHO05D003619 2.1e-18 95.1 61 75.4
Ca_09971_v3 Cicer arietinum L. HOM05D003116 ORTHO05D003619 2.1e-18 95.1 61 73.8
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 2.1e-18 95.1 60 75.0
TAR625G1207 Trochodendron aralioides HOM05D003116 ORTHO05D003619 2.1e-18 95.1 61 75.4
BraA01t01835Z Brassica rapa HOM05D003116 ORTHO05D003619 2.8e-18 94.7 61 75.4
PSO210G3889 Papaver somniferum HOM05D003116 ORTHO05D003619 2.8e-18 94.7 61 73.8
PSO357G0261 Papaver somniferum HOM05D003116 ORTHO05D003619 2.8e-18 94.7 61 77.0
Psat6g052120 Pisum sativum HOM05D003116 ORTHO05D003619 2.8e-18 94.7 61 73.8
Potri.004G092600 Populus trichocarpa HOM05D003116 ORTHO05D003619 3.6e-18 94.4 64 73.4
Potri.005G204500 Populus trichocarpa HOM05D003116 ORTHO05D003619 3.6e-18 94.4 61 75.4
Sc25g0001690 Simmondsia chinensis HOM05D003116 ORTHO05D003619 3.6e-18 94.4 61 75.4
TPR.G14646 Trifolium pratense HOM05D003116 ORTHO05D003619 3.6e-18 94.4 61 73.8
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea HOM05D003116 ORTHO05D003619 6.2e-18 93.6 61 73.8
FvH4_6g00790 Fragaria vesca HOM05D003116 ORTHO05D003619 6.2e-18 93.6 61 73.8
FAN02G4520 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.2e-18 93.6 61 73.8
FAN05G0861 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.2e-18 93.6 61 73.8
FAN09G4293 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.2e-18 93.6 61 73.8
Medtr1g078400 Medicago truncatula HOM05D003116 ORTHO05D003619 6.2e-18 93.6 61 72.1
COL.COLO4_11895 Corchorus olitorius HOM05D003116 ORTHO05D003619 8.1e-18 93.2 61 75.4
CiPaw.02G065200 Carya illinoinensis HOM05D003116 ORTHO05D003619 1.1e-17 92.8 61 72.1
Ciclev10023555m.g Citrus clementina HOM05D003116 ORTHO05D003619 1.1e-17 92.8 61 73.8
unitig_748.g8763 Utricularia gibba HOM05D003116 ORTHO05D003619 1.1e-17 92.8 61 73.8
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.8e-17 92.0 61 72.1
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis HOM05D003116 ORTHO05D003619 1.8e-17 92.0 61 72.1
AT3G58390 Arabidopsis thaliana HOM05D003116 ORTHO05D003619 1.8e-17 92.0 61 72.1
Cfa006285 Carpinus fangiana HOM05D003116 ORTHO05D003619 2.4e-17 91.7 61 72.1
Haze_04522 Corylus avellana HOM05D003116 ORTHO05D003619 2.4e-17 91.7 61 72.1
FAN14G1801 Fragaria x ananassa HOM05D003116 ORTHO05D003619 2.4e-17 91.7 61 72.1
Aqoxy5G00402 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 3.1e-17 91.3 61 73.8
Pp3c4_11130 Physcomitrium patens HOM05D003116 ORTHO05D003619 3.1e-17 91.3 61 70.5
RcHm_v2.0_Chr4g0442151 Rosa chinensis HOM05D003116 ORTHO05D003619 4.0e-17 90.9 61 70.5
Sed0012106 Sechium edule HOM05D003116 ORTHO05D003619 4.0e-17 90.9 61 73.8
SEGI_30925 Sequoiadendron giganteum HOM05D003116 ORTHO05D003619 5.3e-17 90.5 61 70.5
EL10Ac1g01549 Beta vulgaris HOM05D003116 ORTHO05D003619 1.2e-16 89.4 60 73.3
Sed0017776 Sechium edule HOM05D003116 ORTHO05D003619 1.5e-16 89.0 60 65.0
SMO356G0619 Selaginella moellendorffii HOM05D003116 ORTHO05D003619 1.5e-16 89.0 61 67.2
Zm00001eb067580 Zea mays HOM05D003116 ORTHO05D003619 1.5e-16 89.0 61 68.9
CARHR168750 Cardamine hirsuta HOM05D003116 ORTHO05D003619 2.0e-16 88.6 61 68.9
CBR_g24366 Chara braunii HOM05D003116 ORTHO05D003619 2.6e-16 88.2 61 65.6
Glyma.19G188500 Glycine max HOM05D003116 ORTHO05D003619 3.4e-16 87.8 58 69.0
Duzib128G1204 Durio zibethinus HOM05D003116 ORTHO05D003619 5.8e-16 87.0 58 72.4
Mapoly0014s0040 Marchantia polymorpha HOM05D003116 ORTHO05D003619 7.6e-16 86.7 61 67.2
BcaC07g37718 Brassica carinata HOM05D003116 ORTHO05D003619 9.9e-16 86.3 61 67.2
A08p10310 Brassica napus HOM05D003116 ORTHO05D003619 9.9e-16 86.3 61 67.2
BolC8t48097H Brassica oleracea HOM05D003116 ORTHO05D003619 9.9e-16 86.3 61 67.2
BraA08t33029Z Brassica rapa HOM05D003116 ORTHO05D003619 9.9e-16 86.3 61 67.2
BraA08t33030Z Brassica rapa HOM05D003116 ORTHO05D003619 9.9e-16 86.3 61 67.2
Aa31LG7G11530 Aethionema arabicum HOM05D003116 ORTHO05D003619 1.3e-15 85.9 61 67.2
Sp7g11900 Schrenkiella parvula HOM05D003116 ORTHO05D003619 2.2e-15 85.1 61 65.6
Thecc.05G075800 Theobroma cacao HOM05D003116 ORTHO05D003619 3.8e-15 84.3 61 65.6
BcaB04g18111 Brassica carinata HOM05D003116 ORTHO05D003619 4.9e-15 84.0 58 65.5
Cre09.g388615 Chlamydomonas reinhardtii HOM05D003116 ORTHO05D003619 6.4e-15 83.6 56 69.6
Atru.chr8.1700 Acer truncatum HOM05D003116 ORTHO05D003619 1.9e-14 82.0 58 67.2
Actinidia29561 Actinidia chinensis HOM05D003116 ORTHO05D003619 1.9e-14 82.0 61 68.9
FvH4_4g33100 Fragaria vesca HOM05D003116 ORTHO05D003619 1.9e-14 82.0 54 74.1
FAN12G0407 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.9e-14 82.0 54 74.1
FAN22G1543 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.9e-14 82.0 54 74.1
MD12G1258200 Malus domestica HOM05D003116 ORTHO05D003619 3.2e-14 81.3 50 76.0
FAN07G2794 Fragaria x ananassa HOM05D003116 ORTHO05D003619 4.2e-14 80.9 54 72.2
Phvul.001G183700 Phaseolus vulgaris HOM05D003116 ORTHO05D003619 7.1e-14 80.1 56 66.1
COL.COLO4_22257 Corchorus olitorius HOM05D003116 ORTHO05D003619 1.2e-13 79.3 61 62.3
Medtr7g102760 Medicago truncatula HOM05D003116 ORTHO05D003619 1.2e-13 79.3 59 61.0
GSVIVG01033716001 Vitis vinifera HOM05D003116 ORTHO05D003619 1.2e-13 79.3 61 62.3
Psat3g038280 Pisum sativum HOM05D003116 ORTHO05D003619 2.7e-13 78.2 59 61.0
PRCOL_00002239 Prasinoderma coloniale HOM05D003116 ORTHO05D003619 2.7e-13 78.2 60 56.7
VMungo1383G1045 Vigna mungo HOM05D003116 ORTHO05D003619 2.7e-13 78.2 56 60.7
CSS0019586 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 4.6e-13 77.4 56 60.7
FAN17G2384 Fragaria x ananassa HOM05D003116 ORTHO05D003619 6.0e-13 77.0 52 69.2
Lj1g0028191 Lotus japonicus HOM05D003116 ORTHO05D003619 6.0e-13 77.0 59 61.0
Lalb_Chr25g0288771 Lupinus albus HOM05D003116 ORTHO05D003619 7.9e-13 76.6 61 57.4
CSS0045595 Camellia sinensis var. sinensis HOM05D003116 ORTHO05D003619 1.0e-12 76.3 56 58.9
Thecc.01G141600 Theobroma cacao HOM05D003116 ORTHO05D003619 1.3e-12 75.9 61 59.0
Lj2P124T66 Lonicera japonica HOM05D003116 ORTHO05D003619 3.0e-12 74.7 58 60.3
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea HOM05D003116 ORTHO05D003619 3.9e-12 74.3 57 61.4
BolC1t02337H Brassica oleracea HOM05D003116 ORTHO05D003619 2.5e-11 71.6 47 70.2
arahy.Tifrunner.gnm1.ann1.I0YB5S Arachis hypogaea HOM05D003116 ORTHO05D003619 7.4e-11 70.1 57 57.9
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea HOM05D003116 ORTHO05D003619 7.4e-11 70.1 57 56.1
Aqoxy2G04101 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 1.3e-10 69.3 61 54.1
MCO02G454 Micromonas commoda HOM05D003116 ORTHO05D003619 3.7e-10 67.8 60 50.0
Peaxi162Scf00110g00082 Petunia axillaris HOM05D003116 ORTHO05D003619 4.8e-10 67.4 61 49.2
FAN09G4125 Fragaria x ananassa HOM05D003116 ORTHO05D003619 8.2e-10 66.6 56 55.4
Dinv37361 Davidia involucrata HOM05D003116 ORTHO05D003619 1.8e-09 65.5 49 65.3
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea HOM05D003116 ORTHO05D003619 2.4e-09 65.1 57 54.4
Prupe.7G122700 Prunus persica HOM05D003116 ORTHO05D003619 1.5e-08 62.4 55 56.4
Solyc10g083770.3 Solanum lycopersicum HOM05D003116 ORTHO05D003619 3.4e-08 61.2 62 48.4
BcaC09g50563 Brassica carinata HOM05D003116 ORTHO05D003619 4.5e-08 60.8 42 66.7
Actinidia39860 Actinidia chinensis HOM05D003116 ORTHO05D003619 7.6e-08 60.1 59 47.5
FvH4_6g17270 Fragaria vesca HOM05D003116 ORTHO05D003619 7.6e-08 60.1 38 73.7
arahy.Tifrunner.gnm1.ann1.PEQF49 Arachis hypogaea HOM05D000048 ORTHO05D003619 1.0e-07 59.7 48 58.3
FAN02G4294 Fragaria x ananassa HOM05D003116 ORTHO05D003619 1.0e-07 59.7 47 61.7
Nitab4.5_0010350g0020 Nicotiana tabacum HOM05D003116 ORTHO05D003619 1.7e-07 58.9 58 50.0
Nitab4.5_0000132g0470 Nicotiana tabacum HOM05D003116 ORTHO05D003619 2.9e-07 58.2 61 49.2
Aqoxy2G00490 Aquilegia oxysepala HOM05D003116 ORTHO05D003619 3.8e-07 57.8 57 47.4
CAN.G541.24 Capsicum annuum HOM05D003116 ORTHO05D003619 3.8e-07 57.8 61 45.9
Gohir.A04G068200 Gossypium hirsutum HOM05D003116 ORTHO05D003619 6.5e-07 57.0 58 51.7
TPR.G14663 Trifolium pratense HOM05D003116 ORTHO05D003619 1.9e-06 55.5 41 61.0
PGSC0003DMG400028274 Solanum tuberosum HOM05D003116 ORTHO05D003619 2.5e-06 55.1 61 44.3


User provided reference genes

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