Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 8.9e-237 823.2 400 100.0
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 2.3e-168 595.9 402 73.4
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 5.7e-167 591.3 402 71.6
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 7.4e-167 590.9 404 71.3
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 3.8e-163 578.6 400 70.8
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 6.5e-163 577.8 402 70.4
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 1.4e-162 576.6 401 71.1
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 6.1e-161 571.2 399 69.2
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 6.1e-161 571.2 399 69.2
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 3.3e-159 565.5 402 69.4
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 7.4e-159 564.3 399 68.4
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 7.4e-159 564.3 401 68.6
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 9.7e-159 563.9 404 69.1
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 9.7e-159 563.9 393 71.8
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 1.3e-158 563.5 398 68.3
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 6.3e-158 561.2 399 67.7
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 6.3e-158 561.2 397 68.5
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 6.3e-158 561.2 402 68.2
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 1.1e-157 560.5 402 68.7
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.4e-157 560.1 400 68.8
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 1.8e-157 559.7 395 68.6
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 2.4e-157 559.3 397 68.8
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 3.1e-157 558.9 389 69.2
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 7.0e-157 557.8 396 67.9
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 7.0e-157 557.8 396 68.4
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 1.2e-156 557.0 405 66.9
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 2.0e-156 556.2 396 67.9
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 4.5e-156 555.1 399 67.4
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 5.9e-156 554.7 400 66.0
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 7.7e-156 554.3 393 69.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 7.7e-156 554.3 396 67.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.3e-155 553.5 408 67.6
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 1.3e-155 553.5 396 68.4
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 2.2e-155 552.7 442 63.6
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 2.9e-155 552.4 393 69.7
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.8e-155 552.0 418 66.7
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 8.5e-155 550.8 430 65.3
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 1.5e-154 550.1 397 68.8
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.9e-154 549.7 395 67.3
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 3.2e-154 548.9 396 67.7
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 3.2e-154 548.9 396 66.9
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 4.2e-154 548.5 393 69.2
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 1.6e-153 546.6 447 64.0
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.7e-153 545.8 416 64.4
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 1.8e-152 543.1 397 69.5
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 8.8e-152 540.8 400 67.5
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 3.3e-151 538.9 399 64.9
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 1.3e-150 537.0 399 64.9
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 1.3e-150 537.0 398 66.3
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 1.3e-150 537.0 410 66.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 1.7e-150 536.6 399 64.9
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 2.8e-150 535.8 399 65.2
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.8e-150 535.8 441 61.9
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 1.1e-149 533.9 391 68.3
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 1.4e-149 533.5 400 65.8
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 5.9e-148 528.1 402 65.7
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 3.8e-147 525.4 361 72.0
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 6.1e-145 518.1 393 65.4
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 1.0e-144 517.3 394 66.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 3.0e-144 515.8 397 64.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 3.0e-144 515.8 399 62.7
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 5.2e-144 515.0 397 64.0
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 5.2e-144 515.0 391 65.7
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 8.8e-144 514.2 504 55.0
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 7.5e-143 511.1 404 64.1
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 2.2e-142 509.6 402 63.2
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 1.8e-141 506.5 402 63.2
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.2e-140 503.8 402 64.4
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 4.5e-140 501.9 402 62.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 7.7e-140 501.1 438 56.8
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 7.7e-140 501.1 402 62.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 3.8e-139 498.8 406 62.6
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 3.8e-139 498.8 412 62.6
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 5.0e-139 498.4 410 62.4
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 5.0e-139 498.4 401 63.6
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 1.5e-138 496.9 416 61.5
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.9e-138 496.5 394 63.7
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 3.2e-138 495.7 412 62.4
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 3.2e-138 495.7 417 61.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 5.5e-138 495.0 424 60.6
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 2.7e-137 492.7 425 60.9
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 2.8e-134 482.6 403 61.0
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 2.4e-133 479.6 411 60.1
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 2.7e-132 476.1 429 55.9
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 3.3e-130 469.2 371 63.1
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 2.3e-128 463.0 364 63.5
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 9.8e-127 457.6 411 60.3
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.2e-126 456.4 403 57.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 6.4e-126 454.9 392 57.9
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 5.4e-125 451.8 365 62.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 1.1e-117 427.6 272 75.0
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 6.8e-112 408.3 269 75.5
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.3e-106 389.4 302 68.9
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 5.4e-101 372.1 429 47.1
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.3e-99 366.7 390 49.5
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 2.2e-94 350.1 398 49.2
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 1.9e-93 347.1 432 44.4
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 5.4e-93 345.5 269 66.5
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 2.4e-88 330.1 281 55.9
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 9.9e-87 324.7 425 43.1
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-85 320.9 209 76.1
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 2.7e-84 316.6 209 75.1
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.1e-82 311.2 208 73.6
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.1e-72 278.1 356 44.4
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.5e-71 274.2 210 62.4
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 6.3e-65 252.3 156 71.2
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.0e-55 220.7 407 36.1
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 2.4e-40 170.6 264 38.6
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 8.5e-38 162.2 143 59.4
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 1.1e-37 161.8 92 81.5
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.1e-37 161.8 163 53.4
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 5.7e-34 149.4 198 39.4
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 3.6e-28 130.2 130 51.5
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 6.1e-28 129.4 436 24.8
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 4.4e-26 123.2 131 51.1
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 8.3e-25 119.0 107 54.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.0e-18 97.8 51 86.3
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 2.7e-15 87.4 67 58.2
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.0e-11 75.5 103 37.9
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-11 75.1 85 48.2
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 4.0e-11 73.6 56 73.2
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 7.0e-08 62.8 66 48.5
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.6e-06 56.2 31 83.9


User provided reference genes

Program Settings