Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 4.5e-52 207.6 103 100.0
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 1.9e-50 202.2 103 95.1
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 9.5e-50 199.9 103 94.2
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.2e-49 199.5 103 94.2
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-49 199.1 103 94.2
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.1e-49 198.7 103 94.2
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.1e-49 198.7 103 94.2
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.8e-49 198.4 103 94.2
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.6e-49 198.0 103 93.2
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.6e-49 198.0 103 93.2
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 4.7e-49 197.6 103 93.2
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.7e-49 197.6 103 93.2
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 4.7e-49 197.6 103 93.2
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 4.7e-49 197.6 103 93.2
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 4.7e-49 197.6 103 93.2
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 4.7e-49 197.6 103 93.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 6.1e-49 197.2 103 93.2
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 6.1e-49 197.2 103 92.2
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 6.1e-49 197.2 103 93.2
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 6.1e-49 197.2 103 93.2
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.1e-49 197.2 103 93.2
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 6.1e-49 197.2 103 93.2
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 8.0e-49 196.8 103 93.2
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 1.0e-48 196.4 103 93.2
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.0e-48 196.4 103 92.2
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.0e-48 196.4 103 92.2
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-48 196.4 102 91.2
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.0e-48 196.4 102 91.2
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.4e-48 196.1 103 92.2
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.4e-48 196.1 103 92.2
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 1.8e-48 195.7 103 93.2
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 2.3e-48 195.3 103 91.3
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.3e-48 195.3 103 92.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 2.3e-48 195.3 103 92.2
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 2.3e-48 195.3 103 92.2
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.3e-48 195.3 103 90.3
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 3.1e-48 194.9 103 92.2
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 3.1e-48 194.9 103 90.3
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 4.0e-48 194.5 103 91.3
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.0e-48 194.5 103 91.3
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 4.0e-48 194.5 103 92.2
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 5.2e-48 194.1 103 91.3
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.2e-48 194.1 103 91.3
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 5.2e-48 194.1 103 91.3
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 5.2e-48 194.1 102 91.2
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 5.2e-48 194.1 102 91.2
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 6.8e-48 193.7 103 91.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 6.8e-48 193.7 103 91.3
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 89.3
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 89.3
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 90.3
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 90.3
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 90.3
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 90.3
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 8.9e-48 193.4 103 89.3
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.5e-47 192.6 103 90.3
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.5e-47 192.6 102 91.2
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.5e-47 192.6 103 91.3
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.5e-47 192.6 103 90.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.0e-47 192.2 103 89.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 88.3
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.6e-47 191.8 103 89.3
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 91.3
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 90.3
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 3.4e-47 191.4 103 89.3
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 4.4e-47 191.0 103 89.3
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.4e-47 191.0 103 89.3
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 5.8e-47 190.7 103 90.3
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.8e-47 190.7 103 90.3
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.8e-47 190.7 103 88.3
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 7.5e-47 190.3 103 88.3
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 7.5e-47 190.3 103 89.3
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 9.8e-47 189.9 103 88.3
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.3e-46 189.5 103 90.3
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-46 189.5 103 87.4
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-46 189.5 103 87.4
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.7e-46 189.1 103 89.3
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.9e-46 188.3 103 90.3
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.9e-46 188.3 103 89.3
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 3.7e-46 188.0 102 89.2
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 4.9e-46 187.6 102 87.3
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 6.4e-46 187.2 103 86.4
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 8.3e-46 186.8 103 87.4
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.4e-45 186.0 103 88.3
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.9e-45 185.7 103 89.3
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.9e-45 185.7 103 89.3
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.9e-45 185.7 103 89.3
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.9e-45 185.7 103 89.3
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.4e-45 185.3 103 85.4
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 3.2e-45 184.9 103 86.4
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 4.1e-45 184.5 103 88.3
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 4.1e-45 184.5 103 88.3
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 4.1e-45 184.5 103 86.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 7.0e-45 183.7 103 88.3
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 7.0e-45 183.7 103 88.3
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.3e-43 178.7 103 82.5
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 8.6e-43 176.8 102 84.3
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.1e-42 176.4 111 82.0
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.5e-42 175.3 98 87.8
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.2e-41 172.9 97 84.5
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-40 169.5 115 77.4
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.7e-38 162.5 90 87.8
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.7e-38 161.4 83 92.8
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.7e-38 161.4 85 91.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 6.4e-38 160.6 86 89.5
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 8.3e-38 160.2 83 92.8
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 8.3e-38 160.2 83 92.8
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 1.1e-37 159.8 83 92.8
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.9e-37 159.1 85 89.4
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.4e-37 158.7 83 90.4
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.1e-37 157.9 83 90.4
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 5.4e-37 157.5 83 89.2
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 5.4e-37 157.5 84 89.3
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 7.0e-37 157.1 83 89.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 7.0e-37 157.1 83 89.2
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.2e-36 156.4 83 89.2
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.6e-36 156.0 83 89.2
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 2.1e-36 155.6 97 77.3
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.7e-36 155.2 81 91.4
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.5e-36 154.8 105 75.2
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 3.5e-36 154.8 105 75.2
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.5e-36 154.8 102 68.6
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 3.5e-36 154.8 85 89.4
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 4.6e-36 154.5 83 86.7
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 4.6e-36 154.5 84 86.9
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.0e-35 153.3 94 79.8
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.3e-35 152.9 103 68.9
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.3e-35 152.1 83 86.7
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.0e-35 151.8 98 77.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.9e-35 151.4 83 88.0
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 3.3e-34 148.3 102 71.6
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.6e-33 146.0 95 76.8
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-32 143.3 73 94.5
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.9e-29 132.5 108 65.7
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 7.1e-29 130.6 139 53.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 5.1e-27 124.4 103 64.1
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.6e-27 123.6 71 84.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.3e-26 120.6 71 83.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.2e-25 119.8 71 83.1
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.4e-24 115.5 77 72.7
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.2e-23 113.2 57 93.0
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.7e-22 109.4 73 69.9
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 9.0e-16 87.0 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.7e-14 82.8 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 5.4e-13 77.8 74 55.4
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.1e-10 70.1 38 78.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 9.6e-10 67.0 34 88.2
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.0e-08 61.6 98 42.9


User provided reference genes

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