Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 1.9e-111 406.0 219 100.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 9.9e-81 303.9 224 71.9
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 7.1e-79 297.7 222 70.3
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.3e-77 292.7 225 70.7
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.3e-77 292.7 225 70.7
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 6.6e-77 291.2 224 71.9
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.1e-76 290.4 227 70.0
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-76 290.4 224 69.6
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.6e-76 288.1 224 68.8
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.6e-76 288.1 223 69.5
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.4e-74 283.5 225 68.4
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 5.3e-74 281.6 224 69.6
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.2e-73 280.4 221 72.4
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 9.9e-73 277.3 243 64.6
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.9e-71 273.1 223 65.5
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 7.1e-71 271.2 228 66.2
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.2e-70 270.4 223 67.7
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.7e-70 269.2 223 66.8
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.7e-70 269.2 222 65.8
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.3e-69 266.9 227 63.4
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 6.7e-69 264.6 233 70.4
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.5e-68 262.7 222 66.7
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 2.1e-67 259.6 229 64.6
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 4.8e-67 258.5 207 68.6
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 6.2e-67 258.1 224 63.4
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.1e-66 257.3 234 67.5
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.4e-66 256.9 222 64.4
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.8e-66 256.5 226 66.4
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.5e-65 253.4 206 71.4
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 2.0e-65 253.1 224 68.3
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 2.6e-65 252.7 241 67.6
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.6e-65 252.7 221 62.4
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 3.4e-65 252.3 222 62.6
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 7.6e-65 251.1 229 61.1
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.0e-64 250.8 231 61.5
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.9e-64 249.2 228 60.5
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 4.9e-64 248.4 238 58.4
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 6.5e-64 248.1 222 61.7
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.5e-63 246.1 228 60.1
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 4.2e-63 245.4 224 61.6
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 5.5e-63 245.0 234 64.5
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 7.1e-63 244.6 155 80.6
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 7.1e-63 244.6 232 59.1
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.2e-62 243.8 226 65.5
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.7e-62 242.7 226 60.6
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.7e-62 242.7 226 61.1
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 6.0e-62 241.5 227 59.5
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.0e-61 240.7 228 66.2
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 1.8e-61 240.0 254 59.8
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.9e-61 238.8 226 64.2
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 6.7e-61 238.0 229 58.5
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 6.7e-61 238.0 219 57.5
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 8.7e-61 237.7 230 61.3
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.1e-60 237.3 223 57.4
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.1e-60 237.3 236 60.6
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 2.5e-60 236.1 213 62.9
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.5e-60 236.1 224 62.5
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.3e-60 235.3 221 59.7
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 5.7e-60 235.0 234 56.4
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 9.6e-60 234.2 221 59.3
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.3e-59 233.8 214 62.6
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 4.8e-59 231.9 222 56.8
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 6.3e-59 231.5 228 61.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.8e-58 229.9 224 62.9
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.8e-58 229.9 224 57.6
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 4.1e-58 228.8 204 62.7
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 6.9e-58 228.0 222 58.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 9.0e-58 227.6 196 63.3
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.0e-57 226.5 225 56.9
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.0e-56 224.2 196 62.8
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 1.3e-56 223.8 229 54.6
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.3e-56 223.8 204 66.2
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.3e-56 223.8 226 56.2
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.3e-56 223.8 196 61.7
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.7e-56 223.4 223 56.5
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 8.5e-56 221.1 218 54.6
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.1e-55 220.7 221 60.2
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 1.4e-55 220.3 222 56.3
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 2.5e-55 219.5 222 55.9
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 2.5e-55 219.5 222 55.9
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.5e-55 219.5 227 55.1
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 4.2e-55 218.8 151 71.5
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 5.5e-55 218.4 227 55.1
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 5.5e-55 218.4 220 59.1
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 7.2e-55 218.0 228 52.6
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 9.3e-55 217.6 228 57.0
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.2e-54 217.2 184 60.9
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.2e-54 217.2 228 59.2
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.6e-54 215.7 241 51.9
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 6.1e-54 214.9 239 51.9
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.9e-54 214.5 240 51.7
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 7.9e-54 214.5 219 53.9
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.0e-53 214.2 229 53.3
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 1.0e-53 214.2 233 55.4
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.8e-53 213.4 237 52.7
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 1.8e-53 213.4 132 81.8
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 2.3e-53 213.0 237 52.3
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 3.0e-53 212.6 231 57.1
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 3.0e-53 212.6 240 52.1
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 3.9e-53 212.2 219 55.7
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 5.1e-53 211.8 244 49.6
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.7e-53 211.5 246 50.4
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 6.7e-53 211.5 226 55.3
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 6.7e-53 211.5 219 52.5
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 1.1e-52 210.7 203 56.2
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.5e-52 210.3 151 70.2
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.9e-52 209.9 222 52.7
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 4.3e-52 208.8 221 52.0
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 9.7e-52 207.6 219 54.8
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.6e-51 206.8 229 52.0
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.2e-51 206.5 232 53.0
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 2.8e-51 206.1 200 55.5
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 2.8e-51 206.1 179 64.8
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 6.3e-51 204.9 241 51.0
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.4e-50 203.0 218 53.7
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 3.1e-50 202.6 206 53.9
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 2.0e-49 199.9 235 54.0
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 3.4e-49 199.1 225 53.8
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 5.9e-49 198.4 203 61.1
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 7.7e-49 198.0 145 69.7
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.1e-47 194.1 230 48.7
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 3.2e-47 192.6 233 48.1
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 5.5e-47 191.8 231 49.4
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 9.4e-47 191.0 256 44.9
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 2.7e-46 189.5 204 58.3
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 4.6e-46 188.7 240 47.1
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-45 187.6 240 47.1
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 5.1e-45 185.3 246 45.9
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.3e-44 182.6 225 46.2
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 4.8e-43 178.7 221 49.3
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 4.5e-41 172.2 163 55.2
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 3.8e-40 169.1 138 63.0
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.2e-39 164.9 142 61.3
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 7.2e-39 164.9 247 41.3
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 7.9e-38 161.4 152 52.0
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.0e-37 161.0 227 41.9
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 7.4e-36 154.8 128 61.7
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.9e-33 145.2 226 41.6
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.0e-32 144.4 166 56.0
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.6e-30 137.1 232 39.7
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.2e-25 120.9 71 80.3
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 9.4e-23 111.3 217 33.6
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 5.2e-21 105.5 150 45.3
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 9.8e-20 101.3 55 81.8
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 2.2e-19 100.1 61 72.1
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.4e-18 97.4 134 46.3
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.5e-15 87.4 55 69.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.5e-15 87.4 53 73.6
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.1e-14 83.6 72 56.9
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.4e-13 80.9 86 48.8
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 5.4e-10 68.9 58 58.6
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-09 67.0 46 71.7
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 5.9e-09 65.5 77 48.1
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.3e-08 64.3 47 61.7
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 2.3e-08 63.5 68 42.6
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 8.6e-08 61.6 148 35.1
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-06 57.8 42 66.7


User provided reference genes

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