Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.1e-50 203.0 103 100.0
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 9.5e-34 146.7 104 74.0
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 3.6e-33 144.8 87 81.6
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.1e-32 141.7 104 70.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 3.1e-32 141.7 91 76.9
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 8.9e-32 140.2 87 79.3
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.9e-32 140.2 99 68.7
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.2e-31 139.8 103 68.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.2e-31 139.8 88 78.4
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.2e-31 139.8 88 78.4
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.2e-31 139.8 101 69.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.5e-31 139.4 87 80.5
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.4e-31 138.3 84 78.6
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.4e-31 137.9 104 68.3
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.5e-31 137.1 88 77.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 7.5e-31 137.1 86 76.7
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.3e-30 136.3 85 74.1
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.3e-30 136.3 81 82.7
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.7e-30 136.0 87 75.9
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.2e-30 135.6 88 73.9
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 2.9e-30 135.2 85 76.5
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.9e-30 135.2 87 77.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.7e-30 134.8 88 76.1
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 4.9e-30 134.4 84 79.8
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 6.4e-30 134.0 86 75.6
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 8.3e-30 133.7 82 80.5
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.1e-29 133.3 85 76.5
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.1e-29 133.3 87 74.7
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.1e-29 133.3 88 75.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.4e-29 132.9 88 76.1
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-29 132.5 85 76.5
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.4e-29 132.1 84 76.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.4e-29 132.1 87 74.7
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.2e-29 131.7 101 65.3
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.2e-29 131.7 86 75.6
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.2e-29 131.7 87 75.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 5.4e-29 131.0 93 68.8
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 5.4e-29 131.0 86 74.4
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 5.4e-29 131.0 86 76.7
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 9.2e-29 130.2 103 65.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 9.2e-29 130.2 103 64.1
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.2e-28 129.8 84 75.0
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.6e-28 129.4 81 81.5
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.6e-28 129.4 84 75.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.6e-28 129.4 103 66.0
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.7e-28 128.6 88 72.7
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.7e-28 128.6 87 73.6
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.5e-28 128.3 86 73.3
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.6e-28 127.9 88 71.6
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.6e-28 127.9 83 72.3
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.0e-28 127.5 81 77.8
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.0e-28 127.5 81 77.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.0e-28 127.5 81 80.2
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.0e-28 127.5 81 80.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.0e-28 127.5 81 80.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.0e-27 126.7 98 64.3
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.0e-27 126.7 88 69.3
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.0e-27 126.7 84 73.8
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.0e-27 126.7 88 72.7
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.3e-27 126.3 82 75.6
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.3e-27 126.3 98 66.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 76.5
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 76.5
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 76.5
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.7e-27 125.9 83 77.1
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 2.3e-27 125.6 86 74.4
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 2.3e-27 125.6 81 79.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.3e-27 125.6 85 71.8
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.3e-27 125.6 87 72.4
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.3e-27 125.6 87 72.4
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 3.0e-27 125.2 88 72.7
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 3.0e-27 125.2 88 72.7
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.0e-27 125.2 81 75.3
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 3.9e-27 124.8 86 73.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 5.1e-27 124.4 81 75.3
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 5.1e-27 124.4 85 76.5
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 6.6e-27 124.0 86 73.3
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 6.6e-27 124.0 86 73.3
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 6.6e-27 124.0 86 73.3
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 8.6e-27 123.6 94 68.1
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.1e-26 123.2 93 64.5
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.5e-26 122.9 81 74.1
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 1.5e-26 122.9 91 67.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.9e-26 122.5 90 71.1
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.9e-26 122.5 81 77.8
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.9e-26 122.5 96 65.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 2.5e-26 122.1 86 69.8
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.3e-26 121.7 94 67.0
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 7.3e-26 120.6 81 72.8
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 9.5e-26 120.2 81 71.6
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 9.5e-26 120.2 88 70.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 9.5e-26 120.2 86 69.8
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.6e-25 119.4 81 72.8
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.6e-25 119.4 87 71.3
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 70.4
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 70.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 70.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 70.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.8e-25 118.6 81 71.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 2.8e-25 118.6 81 71.6
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-25 118.6 81 71.6
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-25 118.6 81 71.6
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.6e-25 118.2 81 75.3
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.6e-25 118.2 88 69.3
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.6e-25 118.2 92 65.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.7e-25 117.9 88 67.0
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 6.2e-25 117.5 74 79.7
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.2e-25 117.5 90 67.8
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.1e-24 116.7 92 65.2
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.1e-24 116.7 94 64.9
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.8e-24 115.9 91 65.9
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.4e-24 115.5 87 65.5
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.0e-24 114.8 81 71.6
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 4.0e-24 114.8 78 73.1
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 5.2e-24 114.4 88 68.2
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 5.2e-24 114.4 81 72.8
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 8.9e-24 113.6 95 66.3
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-23 113.2 79 70.9
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 1.2e-23 113.2 79 70.9
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 1.2e-23 113.2 79 70.9
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 5.8e-23 110.9 76 72.4
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.7e-22 109.4 95 60.0
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.9e-22 108.6 85 69.4
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 2.9e-22 108.6 73 78.1
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 3.8e-22 108.2 73 76.7
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 4.9e-22 107.8 81 61.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.4e-21 106.3 76 72.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.2e-20 103.2 80 67.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.7e-20 102.1 73 72.6
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.3e-19 99.8 83 65.1
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.5e-18 96.3 80 65.0
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.3e-18 94.7 72 69.4
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 4.3e-18 94.7 77 63.6
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 4.8e-17 91.3 92 57.6
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 1.1e-16 90.1 90 52.2
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.0e-15 85.9 76 60.5
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 9.9e-15 83.6 81 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.2e-14 82.4 77 61.0
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.4e-14 80.5 51 76.5
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.4e-14 80.5 51 76.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.2e-13 78.6 55 65.5
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 4.2e-13 78.2 48 75.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 3.9e-11 71.6 50 68.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 5.1e-11 71.2 80 46.2
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 2.9e-06 55.5 40 67.5


User provided reference genes

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