Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 4724.1 2373 100.0
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2956.4 2434 61.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2850.8 2471 59.3
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2800.4 2428 58.5
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2712.6 2381 58.6
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2706.4 2416 57.9
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2702.9 2423 58.0
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2665.6 2417 57.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2665.6 2450 56.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2660.9 2370 57.4
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2659.8 2424 57.1
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2654.0 2438 56.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2645.9 2413 56.6
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2643.2 2413 55.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2629.7 2449 55.7
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2620.5 2432 55.6
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2616.6 2434 55.8
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2613.2 2410 55.4
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2609.3 2425 55.5
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2606.2 2464 55.1
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2580.8 2438 54.5
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2572.7 2393 55.6
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2563.9 2430 54.3
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2560.8 2414 54.8
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2550.8 2429 53.6
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2543.1 2437 54.9
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2540.0 2436 54.1
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2530.4 2438 54.2
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2530.0 2447 53.7
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2529.6 2447 53.7
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2526.5 2434 54.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2525.0 2431 53.0
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2521.1 2438 54.1
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2518.4 2463 52.3
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2512.3 2459 53.3
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2507.2 2465 52.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2498.8 2465 52.1
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2496.1 2464 52.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2495.7 2408 53.2
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2492.2 2426 53.4
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2480.3 2431 53.2
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2457.2 2439 52.8
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2454.9 2389 53.2
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2454.9 2430 52.1
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2454.5 2433 52.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2449.5 2430 53.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2448.3 2436 52.6
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2436.8 2438 52.5
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2432.5 2401 53.5
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2424.0 2438 52.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2421.4 2430 52.1
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2407.9 2432 51.9
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2403.2 2475 50.9
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2396.3 2437 52.1
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2371.7 2418 51.7
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2354.7 2428 52.0
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2348.2 2436 51.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2341.2 2451 50.6
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2337.8 2465 49.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2336.2 2465 49.5
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2335.1 2444 51.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2331.6 2409 50.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2326.2 2425 50.4
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2321.6 2419 50.6
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2315.0 2408 50.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2311.2 2409 50.8
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2309.3 2423 50.1
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2308.5 2408 50.2
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2293.8 2426 50.5
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2291.2 2408 50.5
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2289.6 2448 49.9
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2286.9 2429 50.7
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2285.4 2106 56.1
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2283.1 2410 50.6
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2281.1 2405 50.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2280.4 2427 49.9
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2276.1 2417 50.3
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2272.7 2061 57.2
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2272.7 2428 49.6
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2271.5 2060 57.0
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2270.0 2412 50.3
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2257.3 2444 49.7
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2253.0 2435 49.6
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2229.5 2384 50.0
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2210.3 2261 51.8
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2206.8 2418 49.0
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2134.8 2429 48.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2104.7 2430 48.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1988.4 2364 45.3
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1978.4 2426 45.3
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1895.9 1843 53.2
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1853.2 2405 43.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1807.7 2504 41.3
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1623.2 1444 58.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1614.4 1470 55.7
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1596.6 1468 55.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1568.5 1642 51.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1561.2 1578 52.8
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1495.3 1369 57.0
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1404.8 1409 53.7
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1400.6 1386 52.4
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1294.3 1099 59.1
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1243.4 1552 44.1
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1197.6 1031 58.9
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1181.4 1161 53.4
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1078.9 1012 56.1
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 7.5e-291 1005.4 1026 50.8
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 3.6e-269 933.3 2548 28.6
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 2.5e-262 910.6 1368 39.5
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.8e-253 880.6 2095 30.7
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 6.9e-244 849.4 2110 29.6
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 5.3e-236 823.2 907 47.0
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-219 768.5 853 47.5
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.0e-218 765.8 756 49.5
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.4e-217 761.9 1486 34.3
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 3.2e-185 654.4 2432 25.1
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.9e-178 631.3 811 41.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 5.7e-174 617.1 808 43.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 9.8e-174 616.3 595 53.9
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 7.4e-121 440.7 408 54.7
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 4.2e-116 424.9 318 63.5
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 5.1e-114 417.9 470 49.1
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.0e-110 406.0 476 47.3
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-102 379.8 259 70.3
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 6.9e-95 354.4 332 52.1
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 9.7e-89 334.0 383 46.7
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.6e-86 325.9 314 54.1
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 6.1e-83 314.7 335 47.5
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.2e-75 290.4 222 64.9
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.6e-67 263.5 326 44.8
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.5e-62 245.7 379 40.9
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 5.9e-62 245.0 484 32.4
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 8.6e-61 241.1 226 57.5
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 5.2e-58 231.9 440 35.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 2.0e-49 203.4 150 68.0
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-47 197.6 179 59.8
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 4.1e-47 195.7 152 62.5
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.2e-46 194.1 122 77.9
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.3e-44 186.0 800 24.0
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 3.3e-44 186.0 190 52.6
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 4.4e-41 175.6 130 67.7
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 4.9e-40 172.2 220 43.2
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.2e-39 169.5 288 34.4
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.7e-37 163.7 131 65.6
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 5.0e-37 162.2 149 54.4
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-34 153.7 109 67.9
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.7e-32 147.1 313 30.4
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 2.4e-31 143.3 97 71.1
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.3e-29 136.7 322 32.6
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 2.6e-25 123.2 324 29.6
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.4e-23 116.7 125 46.4
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-22 113.2 91 61.5
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.8e-22 111.7 201 39.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.6e-21 108.6 140 39.3
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 2.8e-19 103.2 141 40.4
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 4.4e-17 95.9 119 42.0
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 9.9e-17 94.7 117 41.9
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 1.3e-16 94.4 152 37.5
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.5e-12 80.9 126 37.3
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.2e-11 75.5 72 51.4
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.9e-08 66.6 77 48.1
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.8e-08 66.2 95 36.8
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 9.3e-07 61.6 128 32.8
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.2e-06 61.2 42 73.8
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 2.7e-06 60.1 39 69.2
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 4.6e-06 59.3 64 43.8


User provided reference genes

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