Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 0.0e+00 1658.7 898 100.0
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 0.0e+00 1125.9 910 67.7
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 0.0e+00 1097.4 899 69.0
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.0e-309 1066.6 923 64.9
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.3e-309 1065.4 915 65.5
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.7e-308 1060.8 931 64.6
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 8.2e-307 1057.0 904 65.0
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.4e-298 1028.9 906 64.8
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.3e-298 1027.7 919 64.4
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.8e-290 1002.7 900 64.7
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.2e-288 995.7 909 63.7
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 2.5e-287 992.3 905 64.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 5.5e-287 991.1 900 63.9
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.4e-287 990.3 933 61.3
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.3e-283 979.9 883 62.5
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 8.3e-283 977.2 908 61.6
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 3.1e-282 975.3 915 60.5
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 7.0e-282 974.2 924 62.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 5.7e-276 954.5 876 61.8
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 4.1e-274 948.3 910 59.1
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 5.4e-274 948.0 918 60.3
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.6e-273 946.4 908 60.2
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 5.9e-273 944.5 909 60.5
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 3.8e-272 941.8 817 64.9
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 7.3e-271 937.6 915 58.8
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 4.7e-270 934.9 923 60.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 8.3e-267 924.1 909 58.2
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.4e-266 923.3 904 58.2
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 3.2e-266 922.2 918 58.7
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 5.4e-266 921.4 924 56.9
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 3.5e-265 918.7 911 57.4
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.3e-264 916.0 910 57.5
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 5.0e-264 914.8 919 57.2
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 4.3e-263 911.8 900 58.2
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 5.6e-263 911.4 912 57.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.3e-261 906.0 865 59.0
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.0e-260 902.9 865 58.7
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.6e-260 902.5 912 58.9
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 7.0e-258 894.4 863 59.9
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.6e-257 893.3 897 58.1
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.6e-257 893.3 902 57.5
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.5e-257 892.1 912 59.6
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 4.6e-257 891.7 872 57.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.3e-256 890.2 912 59.6
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 8.6e-256 887.5 920 56.2
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.1e-255 887.1 911 58.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.3e-253 879.4 842 59.9
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 8.9e-253 877.5 733 65.9
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.5e-252 876.7 902 56.8
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.4e-252 875.5 862 59.5
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 5.8e-252 874.8 798 62.7
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 8.3e-251 870.9 911 58.0
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-250 870.5 896 58.4
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.6e-249 866.7 907 56.2
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 4.3e-247 858.6 859 58.3
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.1e-246 856.3 915 55.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 3.6e-246 855.5 879 58.2
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.1e-245 854.0 932 55.8
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-245 853.6 913 54.5
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 4.0e-245 852.0 903 56.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 5.2e-245 851.7 929 56.8
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.8e-245 851.3 907 56.8
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 5.8e-244 848.2 889 55.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.7e-243 846.7 913 56.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 2.9e-243 845.9 907 57.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 8.4e-243 844.3 809 61.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-242 843.6 918 54.6
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 4.1e-242 842.0 913 54.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.2e-241 840.5 915 56.5
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.5e-241 839.0 907 54.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.3e-240 836.3 918 55.8
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.1e-240 835.1 922 53.8
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.9e-239 833.2 823 58.6
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.3e-239 832.4 900 54.7
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.6e-238 830.1 903 54.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.6e-238 830.1 891 54.5
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 4.7e-238 828.6 905 56.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.5e-236 823.5 889 54.9
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 4.9e-235 818.5 876 56.3
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 7.1e-234 814.7 897 55.7
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 3.3e-231 805.8 903 53.6
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 4.8e-230 802.0 856 55.0
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 3.1e-229 799.3 879 53.7
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.9e-226 790.0 857 53.8
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.7e-225 786.2 921 51.4
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.0e-224 784.3 916 52.1
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.0e-224 782.7 877 53.9
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.1e-223 780.8 874 54.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.3e-222 777.3 904 52.4
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.8e-222 776.2 871 53.6
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-221 773.9 877 54.3
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.4e-221 773.1 883 52.0
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.8e-220 768.5 884 54.0
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.7e-217 759.6 910 51.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.7e-216 755.0 901 51.6
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.0e-213 745.7 897 52.0
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-210 737.3 885 51.0
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 5.5e-210 735.3 890 49.9
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.8e-208 730.3 612 66.0
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 6.7e-208 728.4 889 50.2
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-205 720.7 885 50.7
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-205 720.3 894 49.6
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-204 717.6 906 49.6
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.9e-199 700.3 883 49.3
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 5.9e-196 688.7 908 47.8
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.9e-194 683.7 869 48.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.7e-193 679.9 893 48.7
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.7e-193 679.9 756 52.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.0e-191 673.7 880 49.0
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 3.3e-191 672.9 561 67.2
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 6.3e-182 642.1 892 47.3
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.3e-181 639.0 859 48.0
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.2e-180 637.9 657 58.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 5.5e-178 629.0 875 47.2
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-172 611.3 882 46.7
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 8.0e-169 598.6 661 55.4
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-166 591.3 892 44.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.7e-163 580.9 1067 40.0
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.4e-141 507.3 402 67.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 7.0e-141 505.8 842 41.6
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 6.2e-129 466.1 434 57.8
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 6.8e-128 462.6 787 41.9
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.3e-126 458.4 913 36.8
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.4e-125 454.1 1037 35.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 6.6e-115 419.5 459 54.7
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 7.1e-109 399.4 1003 33.4
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.0e-107 394.0 937 35.1
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-99 368.2 342 57.9
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.8e-99 368.2 278 68.3
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.3e-99 367.9 248 75.0
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 8.4e-94 349.4 896 33.0
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 8.4e-94 349.4 896 33.0
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 7.9e-92 342.8 345 54.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.0e-91 342.4 862 33.6
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 3.3e-82 310.8 984 29.0
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.5e-79 302.0 239 66.9
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.3e-73 282.3 205 71.7
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 4.5e-71 273.9 453 42.6
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.2e-68 265.8 760 31.7
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.7e-68 264.6 325 48.0
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-65 255.8 415 43.9
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.1e-64 250.8 846 29.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 7.0e-64 250.0 411 44.0
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 6.5e-62 243.4 411 43.3
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-60 238.4 403 43.4
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 3.6e-60 237.7 414 42.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.2e-57 228.4 369 42.8
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.6e-52 211.1 319 46.4
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-51 208.8 366 39.9
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 6.3e-49 200.3 311 44.7
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 9.5e-45 186.4 285 43.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.4e-43 182.6 278 43.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.8e-43 182.2 174 62.6
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 6.8e-43 180.3 127 73.2
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.2e-42 179.5 169 60.4
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-40 172.6 190 54.7
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.6e-39 169.1 259 42.9
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.9e-38 164.9 690 26.2
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.5e-37 162.5 130 63.8
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.6e-36 159.1 1150 24.3
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 2.8e-36 158.3 164 57.3
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 4.4e-34 151.0 188 48.4
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 6.6e-30 137.1 312 37.2
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 4.3e-29 134.4 312 36.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.2e-28 130.6 129 58.9
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.2e-27 127.5 838 24.6
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.8e-26 124.0 122 61.5
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 9.2e-24 116.7 307 36.2
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-23 115.5 309 36.2
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 8.1e-20 103.6 181 35.9
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 3.2e-16 91.7 77 63.6
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.6e-12 79.3 331 28.4
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.4e-10 71.6 187 34.2
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-08 66.6 189 32.8
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 3.5e-07 61.6 65 53.8
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 4.6e-07 61.2 124 38.7


User provided reference genes

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