Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1669.8 823 100.0
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1327.0 824 79.4
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1287.7 831 75.2
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1287.3 821 76.6
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1286.6 823 76.3
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1281.2 741 82.1
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1278.8 758 79.6
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1278.5 782 78.5
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1278.1 743 81.0
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1276.9 824 75.6
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1275.0 759 79.8
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1273.8 824 74.9
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1271.5 823 75.6
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1270.8 759 79.6
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1270.4 823 75.3
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1269.6 825 75.6
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1266.1 790 76.6
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1266.1 775 77.4
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1265.8 822 74.9
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1264.2 775 77.3
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1262.3 807 75.5
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1261.1 780 77.8
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1260.7 798 75.4
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1259.6 834 74.1
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1259.2 823 74.6
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1257.3 812 75.2
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1256.1 824 75.2
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1255.0 779 77.2
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1254.6 820 74.8
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1254.2 769 77.5
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1251.9 801 75.2
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1251.5 801 75.5
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1250.7 760 78.2
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1246.1 828 73.9
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1245.7 774 75.8
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 820 74.4
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1236.5 833 73.7
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1235.7 817 73.9
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1231.1 786 74.7
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1227.6 785 75.7
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1227.2 750 76.3
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1226.1 801 74.2
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1225.3 836 71.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1225.3 806 73.2
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1224.5 794 74.7
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1223.8 764 76.6
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1223.8 811 72.9
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1222.2 748 77.5
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1220.7 817 73.3
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1217.2 820 72.0
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1216.8 804 73.1
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1213.7 822 71.4
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1212.2 800 72.5
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1211.8 740 77.2
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 742 76.8
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1206.0 747 76.0
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1205.7 813 72.7
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1202.6 830 70.7
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1201.4 749 75.8
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1199.1 820 71.7
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1198.0 800 72.2
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1192.6 780 75.0
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1188.7 746 75.1
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 822 70.3
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1181.8 823 69.9
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1179.1 789 71.9
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1177.5 839 68.8
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 820 70.5
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 818 69.7
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1176.4 829 69.2
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 803 70.9
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 819 70.2
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1172.1 824 69.5
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 821 70.4
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 819 70.0
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 804 71.0
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1163.7 823 68.9
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1144.8 767 71.7
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1140.9 695 78.0
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 787 70.1
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 687 79.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1110.9 819 67.6
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1105.5 685 75.9
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1105.1 772 70.9
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1101.3 699 75.8
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1100.9 812 66.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1094.0 757 70.7
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1089.3 664 78.5
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.5e-310 1069.3 876 62.9
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 2.7e-304 1048.5 741 68.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 7.3e-302 1040.4 686 72.2
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 2.1e-296 1022.3 651 75.6
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 4.0e-284 981.5 741 62.2
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.4e-281 973.0 745 61.7
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.5e-275 953.0 759 59.0
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.3e-261 906.7 605 72.9
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 7.9e-256 887.5 635 66.6
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 7.9e-248 860.9 688 63.2
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 9.7e-238 827.4 623 63.7
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-226 787.7 678 55.3
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.6e-216 756.9 523 69.6
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.7e-173 614.0 875 40.6
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 4.0e-151 539.7 351 69.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.5e-150 537.7 597 50.4
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 7.4e-129 465.7 333 68.5
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 2.4e-95 354.4 263 65.4
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.0e-85 322.4 289 59.5
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 2.1e-75 288.1 226 63.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 8.3e-72 276.2 259 56.4
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.3e-56 225.7 148 71.6
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.9e-44 185.3 127 68.5
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 7.3e-44 183.3 122 70.5
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 8.1e-43 179.9 138 61.6
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.3e-40 172.6 116 69.0
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 5.3e-26 124.0 92 63.0
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 6.9e-26 123.6 160 45.0
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 2.5e-23 115.2 109 48.6
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 4.8e-19 100.9 109 50.5
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 1.4e-15 89.4 62 66.1
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 2.1e-14 85.5 56 71.4
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 6.7e-13 80.5 46 76.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.2e-09 69.7 43 67.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.2e-08 65.5 40 75.0
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.4e-07 62.8 93 44.1
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.6e-06 58.2 47 61.7


User provided reference genes

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