Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 8.0e-233 810.1 413 100.0
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.8e-201 704.5 415 85.3
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.0e-200 701.4 415 85.1
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 7.6e-199 697.2 413 84.3
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.1e-197 693.3 413 84.7
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 7.1e-197 690.6 413 83.3
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 7.1e-197 690.6 412 84.2
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 7.1e-197 690.6 413 83.5
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 9.3e-197 690.3 413 83.5
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 5.6e-194 681.0 413 81.1
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 7.3e-194 680.6 413 81.6
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 2.1e-193 679.1 413 82.3
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 2.8e-193 678.7 414 81.2
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 4.8e-193 677.9 412 82.0
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 6.2e-193 677.6 413 80.6
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.4e-192 676.4 413 81.4
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.4e-192 676.4 413 80.6
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.0e-192 674.9 413 80.4
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.5e-191 672.9 413 79.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.4e-191 671.8 413 79.9
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.8e-191 671.0 413 79.9
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.3e-190 669.8 414 81.4
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.3e-190 669.8 413 82.1
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.7e-190 669.5 411 81.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.9e-190 667.9 411 80.3
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 4.9e-190 667.9 413 80.6
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 4.2e-189 664.8 414 80.4
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.2e-188 663.3 411 80.8
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.6e-188 662.9 413 79.4
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 3.5e-188 661.8 413 79.4
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 7.9e-188 660.6 411 79.3
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 7.9e-188 660.6 415 80.7
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.3e-187 659.8 413 79.2
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.8e-187 659.4 414 80.0
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 3.9e-187 658.3 413 78.7
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 8.7e-187 657.1 416 78.8
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.1e-186 656.8 414 78.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.5e-186 656.4 411 79.1
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.5e-186 656.4 414 79.5
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 4.3e-186 654.8 416 78.4
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 5.6e-186 654.4 411 79.8
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.8e-185 652.1 413 79.2
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.8e-185 652.1 415 79.5
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.1e-184 650.2 416 78.1
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.4e-184 649.8 413 78.0
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.8e-184 649.4 410 79.3
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.4e-184 649.0 413 77.0
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 3.1e-184 648.7 415 79.0
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 6.9e-184 647.5 413 77.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 6.9e-184 647.5 446 74.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.2e-183 646.7 415 78.3
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.5e-183 646.4 415 78.3
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.5e-183 646.4 413 77.5
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 3.4e-183 645.2 413 79.2
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 4.5e-183 644.8 415 78.8
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.0e-182 643.7 413 78.7
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-182 642.9 417 77.5
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 6.5e-182 641.0 415 77.8
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.4e-181 639.8 415 77.3
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 7.1e-181 637.5 414 78.0
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 7.1e-181 637.5 456 71.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 3.5e-180 635.2 415 76.6
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 6.0e-180 634.4 410 77.8
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.3e-179 632.5 480 70.0
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 3.0e-179 632.1 413 76.3
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.0e-179 632.1 414 76.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 6.7e-179 630.9 413 75.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.1e-178 630.2 376 84.0
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.1e-178 630.2 413 74.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.6e-177 626.3 411 76.4
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 4.8e-177 624.8 413 75.5
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.2e-177 624.4 413 74.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 413 74.1
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.5e-175 619.8 413 73.8
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 2.6e-175 619.0 413 74.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.4e-175 618.6 409 75.1
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 74.1
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 75.1
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.0e-174 617.1 417 74.8
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-174 617.1 413 74.6
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.3e-174 616.7 414 73.2
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.7e-174 616.3 414 73.4
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.2e-174 615.9 413 74.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 2.9e-174 615.5 417 74.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.0e-174 614.8 410 73.9
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 5.0e-174 614.8 414 72.9
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.1e-173 613.6 410 71.5
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.1e-173 613.6 410 71.5
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.1e-173 613.6 410 71.5
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.4e-173 613.2 413 72.6
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-173 612.5 414 73.2
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 3.2e-173 612.1 411 74.2
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.2e-173 612.1 410 73.9
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.2e-173 611.7 410 72.9
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 4.2e-173 611.7 410 73.2
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.6e-172 609.8 509 65.2
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.0e-171 607.1 409 71.4
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.0e-171 607.1 412 71.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.8e-171 606.3 410 71.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.8e-171 606.3 412 70.6
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.8e-171 606.3 411 74.2
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.9e-171 605.1 410 70.2
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 3.9e-171 605.1 413 70.9
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 8.7e-171 604.0 413 73.6
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.1e-170 603.6 412 69.9
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.1e-170 603.6 410 70.0
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.1e-170 603.6 417 73.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.7e-170 601.3 410 72.7
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.8e-168 596.3 403 75.4
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 3.1e-168 595.5 420 73.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.5e-167 593.2 413 71.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.9e-165 586.3 413 69.2
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 9.4e-165 583.9 466 64.6
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.6e-156 555.4 350 78.3
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.2e-153 546.2 410 65.4
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.8e-153 545.8 418 65.1
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.3e-150 537.0 306 85.6
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.9e-150 535.8 430 62.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 4.5e-143 511.9 410 60.0
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.9e-141 506.5 411 60.6
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 4.0e-139 498.8 332 75.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.8e-137 492.7 348 72.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 8.3e-137 491.1 329 73.6
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 3.6e-132 475.7 410 59.5
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.1e-128 464.2 419 58.5
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.1e-128 462.6 334 70.4
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 7.7e-127 458.0 418 58.4
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 4.7e-124 448.7 418 57.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 5.6e-109 398.7 238 80.7
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 2.3e-102 376.7 243 74.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 7.1e-88 328.6 432 44.7
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.8e-76 289.3 181 78.5
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 2.2e-73 280.4 393 44.0
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.5e-69 266.9 237 59.1
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 3.0e-62 243.4 333 43.2
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.1e-55 220.7 188 62.2
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 6.7e-54 215.7 256 51.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 3.4e-50 203.4 113 89.4
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.6e-37 160.6 220 42.7
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.1e-35 155.2 125 58.4
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 9.4e-32 142.1 80 81.2
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 4.7e-31 139.8 86 76.7
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.4e-27 128.3 84 69.0
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.9e-25 120.6 183 44.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 5.5e-24 116.3 90 64.4
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.7e-23 114.0 74 67.6
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.7e-23 114.0 74 67.6
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 6.1e-23 112.8 92 65.2
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 6.1e-23 112.8 92 65.2
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.0e-22 110.2 83 65.1
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.2e-22 109.8 74 64.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 2.0e-21 107.8 92 64.1
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.2e-18 98.6 73 64.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.3e-17 95.1 81 58.0
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.9e-17 94.0 66 62.1
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.5e-13 81.6 86 57.0
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.5e-13 81.6 59 66.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 2.0e-13 81.3 66 57.6
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 8.3e-12 75.9 112 43.8
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 1.1e-11 75.5 112 42.9


User provided reference genes

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