Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 4.6e-33 144.1 76 100.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 5.6e-15 84.0 73 64.4
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 6.2e-14 80.5 63 68.3
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 6.2e-14 80.5 63 68.3
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.4e-13 79.3 62 67.7
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.4e-13 78.6 56 67.9
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.0e-13 77.8 69 62.3
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.2e-13 77.4 69 63.8
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 5.2e-13 77.4 54 70.4
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 6.8e-13 77.0 69 60.9
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 8.9e-13 76.6 74 58.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 8.9e-13 76.6 56 67.9
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.2e-12 76.3 64 62.5
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.0e-12 75.5 43 81.4
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 5.8e-12 73.9 44 79.5
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 9.9e-12 73.2 61 60.7
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 9.9e-12 73.2 75 58.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.3e-11 72.8 47 72.3
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 2.2e-11 72.0 71 56.3
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.9e-11 71.6 57 63.2
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.9e-11 71.6 52 73.1
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 2.9e-11 71.6 68 60.3
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.9e-11 71.6 50 66.0
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.9e-11 71.6 49 71.4
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 3.8e-11 71.2 65 61.5
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 4.9e-11 70.9 45 75.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.4e-11 70.5 53 69.8
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 6.4e-11 70.5 53 69.8
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 6.4e-11 70.5 53 67.9
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 8.4e-11 70.1 52 69.2
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 8.4e-11 70.1 45 77.8
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.1e-10 69.7 45 75.6
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.4e-10 69.3 54 70.4
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.9e-10 68.9 54 63.0
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.9e-10 68.9 54 63.0
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.9e-10 68.9 72 52.8
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.9e-10 68.9 54 64.8
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.4e-10 68.6 58 65.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 2.4e-10 68.6 52 71.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.4e-10 68.6 65 63.1
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 3.2e-10 68.2 45 71.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.2e-10 68.2 44 72.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 4.1e-10 67.8 66 56.1
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 4.1e-10 67.8 57 63.2
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 5.4e-10 67.4 62 59.7
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 5.4e-10 67.4 69 59.4
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 9.2e-10 66.6 50 64.0
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 9.2e-10 66.6 69 55.1
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.2e-09 66.2 43 74.4
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.2e-09 66.2 55 65.5
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 1.6e-09 65.9 57 57.9
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.6e-09 65.9 57 59.6
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.1e-09 65.5 52 63.5
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 2.1e-09 65.5 48 66.7
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.1e-09 65.5 67 58.2
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 2.7e-09 65.1 55 58.2
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 3.5e-09 64.7 66 56.1
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.5e-09 64.7 68 54.4
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 4.6e-09 64.3 55 63.6
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.0e-08 63.2 51 56.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.0e-08 63.2 63 55.6
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.0e-08 63.2 47 66.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.0e-08 63.2 66 54.5
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.0e-08 63.2 66 47.0
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.3e-08 62.8 52 57.7
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.3e-08 62.8 47 63.8
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.3e-08 62.8 49 61.2
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.3e-08 62.8 49 61.2
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.3e-08 62.8 49 61.2
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.3e-08 62.8 49 61.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.3e-08 62.8 68 55.9
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.7e-08 62.4 47 66.0
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.3e-08 62.0 52 55.8
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 3.0e-08 61.6 49 65.3
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 3.0e-08 61.6 41 70.7
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 3.9e-08 61.2 68 55.9
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 5.1e-08 60.8 49 59.2
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 5.1e-08 60.8 49 59.2
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 5.1e-08 60.8 50 56.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 6.6e-08 60.5 43 67.4
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 8.7e-08 60.1 50 56.0
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 8.7e-08 60.1 70 51.4
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.5e-07 59.3 66 53.0
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 1.9e-07 58.9 57 56.1
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 2.5e-07 58.5 65 56.9
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 9.6e-07 56.6 44 65.9
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 1.6e-06 55.8 57 47.4
MD13G1185300 Malus domestica HOM05D008368 ORTHO05D010489 4.7e-06 54.3 45 55.6
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.7e-06 54.3 64 50.0


User provided reference genes

Program Settings