Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.3e-148 529.6 255 100.0
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 2.3e-137 492.3 255 91.8
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 4.0e-134 481.5 255 89.0
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 9.0e-134 480.3 255 90.6
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 9.0e-134 480.3 255 89.0
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 9.9e-133 476.9 255 88.2
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 2.5e-131 472.2 255 87.8
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 88.2
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 9.3e-131 470.3 255 87.8
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 86.7
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 7.9e-130 467.2 255 87.5
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 87.1
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.8e-129 466.1 255 87.1
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.8e-129 466.1 256 87.9
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 2.3e-129 465.7 255 86.3
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 2.3e-129 465.7 255 89.0
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.8
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.8
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.7e-129 464.2 255 86.3
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 6.7e-129 464.2 255 87.1
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 6.7e-129 464.2 256 87.1
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 86.7
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 85.5
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 87.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 8.7e-129 463.8 252 87.3
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.1
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 86.7
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 85.5
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 86.3
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 86.7
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 4.3e-128 461.5 256 85.9
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 4.3e-128 461.5 255 87.1
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 5.6e-128 461.1 254 85.4
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 5.6e-128 461.1 254 85.4
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 86.3
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 85.5
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 85.5
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 9.6e-128 460.3 254 85.0
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 85.9
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.1e-127 459.1 255 85.5
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 6.2e-127 457.6 257 86.0
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.1e-126 456.8 256 85.9
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.8e-126 456.1 255 84.7
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.8e-126 456.1 255 85.9
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.8e-126 456.1 255 84.7
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 86.3
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 86.3
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 84.7
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 85.5
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 85.1
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 85.9
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 84.7
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 85.5
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 84.7
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 85.9
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 9.0e-126 453.8 255 85.5
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 9.0e-126 453.8 255 84.3
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 9.0e-126 453.8 253 84.2
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 84.3
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.2e-125 453.4 253 84.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-125 453.0 256 85.5
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 85.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.0e-125 452.6 255 85.1
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 85.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 4.5e-125 451.4 255 83.9
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 7.6e-125 450.7 255 84.3
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.0e-124 450.3 255 84.3
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.0e-124 450.3 255 84.7
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.0e-124 450.3 256 83.6
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.3e-124 449.9 256 83.2
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.2e-124 449.1 256 85.2
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 84.3
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 84.3
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 3.8e-124 448.4 256 85.2
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 84.3
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 4.9e-124 448.0 253 85.8
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 4.9e-124 448.0 253 85.8
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 4.9e-124 448.0 256 84.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 4.9e-124 448.0 256 84.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 84.3
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 83.5
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.4e-123 446.4 252 83.7
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.9e-123 446.0 256 84.4
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.9e-123 446.0 253 85.4
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.9e-123 446.0 253 85.4
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.9e-123 446.0 252 84.5
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 3.2e-123 445.3 253 85.0
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 5.5e-123 444.5 255 83.5
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.6e-122 443.0 255 83.1
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.1e-122 442.6 256 83.6
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 3.5e-122 441.8 253 85.0
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.6e-122 441.4 252 83.3
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.6e-122 441.4 262 81.7
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 6.1e-122 441.0 256 83.6
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 6.1e-122 441.0 257 81.3
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.1e-122 441.0 255 82.7
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 7.9e-122 440.7 306 72.2
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.3e-121 439.1 253 84.6
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 3.0e-121 438.7 257 80.9
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.1e-120 436.8 255 82.0
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 3.3e-120 435.3 255 83.1
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.3e-120 435.3 294 74.1
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 5.7e-120 434.5 256 82.4
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.7e-119 431.8 252 83.3
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.7e-119 431.8 252 83.3
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 2.4e-118 429.1 255 81.2
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 2.6e-117 425.6 257 79.0
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 4.5e-117 424.9 255 81.2
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 5.9e-117 424.5 231 84.0
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 7.7e-117 424.1 283 74.2
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.0e-116 423.7 240 85.4
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.2e-115 418.3 240 83.3
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.0e-113 413.7 231 82.3
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 3.0e-113 412.1 267 76.4
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 4.5e-109 398.3 219 85.8
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.1e-107 393.7 238 77.7
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.2e-107 392.1 245 76.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 5.5e-107 391.3 241 75.1
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.6e-106 388.7 255 76.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 3.0e-105 385.6 259 74.9
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.1e-104 383.6 226 77.9
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 7.4e-104 380.9 240 75.4
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 9.7e-104 380.6 231 77.9
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 3.5e-101 372.1 319 61.8
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 3.8e-100 368.6 257 69.6
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 6.5e-100 367.9 231 77.1
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.9e-99 366.3 200 85.5
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 7.2e-99 364.4 231 77.5
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.2e-98 363.6 257 68.5
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.1e-98 362.8 255 71.0
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.7e-95 353.2 240 73.8
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.4e-86 323.6 250 67.2
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 4.1e-86 322.0 162 94.4
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 5.0e-84 315.1 162 89.5
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.2e-82 310.5 160 91.2
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.6e-82 310.1 246 60.2
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 5.4e-78 295.0 285 59.3
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.0e-76 290.8 162 87.0
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 2.3e-76 289.7 171 81.3
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.9e-76 289.3 152 90.8
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-75 287.0 201 71.1
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 3.0e-73 279.3 232 53.9
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.2e-64 250.8 268 53.0
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.4e-57 227.3 135 80.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 5.2e-57 225.3 118 89.8
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.4e-54 217.2 232 45.3
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 5.4e-54 215.3 116 87.9
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.5e-48 197.2 121 79.3
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 9.9e-48 194.5 109 85.3
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.1e-46 191.0 165 63.6
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.8e-45 184.9 109 81.7
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.8e-41 173.7 206 46.1
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 2.4e-41 173.3 100 82.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.9e-38 163.7 84 88.1
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 9.3e-38 161.4 83 86.7
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-36 157.5 89 82.0
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.7e-36 154.8 83 85.5
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.3e-35 151.8 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.6e-34 150.6 89 78.7
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 9.0e-33 144.8 75 86.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.0e-33 144.8 89 76.4
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 4.4e-32 142.5 96 76.0
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.4e-31 138.7 81 80.2
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-30 137.9 81 80.2
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.1e-29 133.7 75 82.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.6e-29 132.5 81 76.5
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.9e-29 131.7 75 81.3
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.6e-28 128.6 75 80.0
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 8.7e-28 128.3 84 73.8
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.3e-26 124.4 76 78.9
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-26 123.2 71 80.3
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.2e-24 117.9 82 72.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 7.4e-11 72.0 55 63.6
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.3e-10 71.2 42 78.6
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 4.2e-06 56.2 29 89.7


User provided reference genes

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