Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 0.0e+00 1150.6 611 100.0
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 5.7e-235 817.8 623 71.3
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 4.7e-229 798.1 611 69.2
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.3e-227 792.0 607 69.2
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.9e-223 778.9 622 68.5
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.2e-222 775.4 613 66.6
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 7.2e-222 774.2 613 67.9
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.6e-221 773.1 600 68.3
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.2e-220 768.1 644 64.6
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 8.3e-218 760.8 604 68.4
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.1e-217 758.8 614 66.0
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 4.1e-217 758.4 612 69.9
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.0e-217 757.7 614 65.3
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.9e-216 754.6 637 64.5
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.0e-215 753.8 614 66.4
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.3e-215 753.4 624 65.9
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.5e-215 751.1 609 64.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 8.6e-215 750.7 614 64.7
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.5e-214 749.2 609 64.2
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 3.3e-214 748.8 612 65.7
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.2e-213 746.9 606 68.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.6e-213 746.5 577 66.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.1e-213 746.1 577 66.4
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.1e-213 746.1 577 66.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.8e-213 745.7 597 66.2
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 3.6e-213 745.3 593 68.0
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.6e-213 745.3 595 66.2
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.4e-212 743.4 616 64.3
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 2.0e-211 739.6 607 67.4
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.4e-211 738.4 610 64.9
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.7e-210 736.5 615 65.0
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 8.3e-210 734.2 617 64.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.1e-209 733.8 599 66.3
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.1e-209 733.8 606 67.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.1e-209 732.3 607 64.7
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 5.4e-209 731.5 581 65.6
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 5.4e-209 731.5 601 66.2
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.7e-208 729.2 610 64.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.5e-208 728.8 475 77.5
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.3e-207 726.1 598 65.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 7.3e-206 721.1 629 61.2
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.6e-205 719.9 606 64.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.1e-205 719.5 619 62.8
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.8e-204 716.5 605 62.6
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.3e-204 716.1 610 64.4
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 3.0e-204 715.7 578 66.1
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 4.4e-203 711.8 617 62.1
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 5.8e-203 711.4 610 63.0
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 9.8e-203 710.7 573 67.5
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.7e-202 709.9 625 62.9
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.7e-202 708.8 613 64.1
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 3.7e-202 708.8 523 72.5
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.7e-202 708.8 640 62.2
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.9e-202 708.4 607 64.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.1e-201 707.2 598 63.2
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.4e-201 706.8 553 66.7
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.8e-201 706.4 588 63.1
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 7.0e-201 704.5 590 64.2
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 7.8e-200 701.0 606 62.5
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.3e-199 700.3 655 58.6
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.5e-198 696.8 582 64.3
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.9e-198 696.4 610 63.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 5.6e-198 694.9 610 63.1
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.6e-197 693.3 602 63.6
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 3.6e-197 692.2 616 61.7
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 6.2e-197 691.4 624 61.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 6.2e-197 691.4 602 61.8
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.3e-196 689.5 562 66.0
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 4.0e-196 688.7 580 62.9
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 5.2e-196 688.3 580 63.3
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 6.8e-196 688.0 558 66.5
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.2e-195 687.2 579 63.0
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 4.4e-195 685.3 604 61.3
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 9.8e-195 684.1 612 61.1
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 2.4e-193 679.5 606 61.2
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 4.1e-193 678.7 681 57.1
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 5.4e-193 678.3 612 62.1
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 9.2e-193 677.6 624 61.7
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.2e-192 677.2 585 61.5
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 2.1e-192 676.4 631 60.4
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 2.7e-192 676.0 613 61.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 6.0e-192 674.9 584 61.1
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.3e-191 673.7 599 59.9
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.7e-191 673.3 517 67.7
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 2.3e-191 672.9 579 61.7
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.5e-190 670.2 584 63.0
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.3e-190 669.1 594 62.0
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.3e-190 668.7 554 64.1
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 5.6e-190 668.3 579 61.3
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 2.8e-189 666.0 613 63.3
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 5.2e-188 661.8 609 60.4
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 6.8e-188 661.4 571 61.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.5e-187 660.2 649 56.2
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.0e-187 659.8 605 60.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 2.6e-187 659.4 580 60.2
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 2.6e-187 659.4 605 58.3
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 3.4e-187 659.1 649 56.2
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 3.4e-187 659.1 582 59.8
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 4.4e-187 658.7 580 59.8
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 5.8e-187 658.3 640 59.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.7e-186 656.8 580 59.8
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 8.3e-186 654.4 553 64.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 5.4e-185 651.7 582 61.2
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.2e-184 650.6 596 60.7
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 6.0e-184 648.3 579 59.9
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 6.0e-184 648.3 609 61.2
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.8e-184 647.9 612 58.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.0e-183 647.5 600 59.5
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.7e-183 646.7 607 57.3
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.9e-183 645.6 579 58.9
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 5.1e-183 645.2 580 59.0
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-182 643.7 592 60.1
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.9e-182 643.3 580 59.0
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.9e-180 634.4 647 54.9
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.2e-179 634.0 582 58.4
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-179 633.6 611 58.3
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.9e-178 628.6 616 58.3
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.9e-177 626.7 578 58.8
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.2e-176 624.0 602 58.3
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.6e-176 623.6 580 58.3
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.9e-175 619.0 491 67.0
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 8.7e-175 617.8 573 59.0
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.9e-174 616.7 613 55.6
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 7.1e-169 598.2 630 52.5
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.5e-166 590.5 469 65.5
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 9.6e-166 587.8 587 55.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.6e-165 585.9 612 53.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.4e-164 583.2 589 55.0
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 9.0e-164 581.3 591 55.2
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.8e-162 575.9 558 55.9
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 5.4e-161 572.0 562 55.9
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.9e-158 563.5 578 54.0
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.4e-156 557.4 521 60.8
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.8e-154 549.3 645 50.5
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.0e-151 539.7 563 54.7
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.8e-148 530.4 581 51.6
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 8.7e-143 511.5 600 48.0
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 3.7e-141 506.1 435 61.6
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.1e-140 504.6 591 49.1
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.9e-138 496.5 562 51.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.1e-135 485.7 338 72.5
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.3e-134 483.0 444 58.6
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.7e-133 479.6 387 66.1
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 8.2e-117 425.2 392 56.1
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.2e-114 417.2 315 70.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.2e-105 386.3 641 38.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 4.1e-100 369.8 362 56.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.3e-98 364.0 336 57.1
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 3.3e-65 253.8 163 81.6
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 7.3e-65 252.7 234 63.2
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.6e-64 250.4 274 55.5
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.3e-58 231.1 260 51.2
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.8e-48 196.8 138 75.4
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.8e-39 168.3 385 31.4
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.9e-36 158.3 476 26.1
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 9.6e-33 146.0 576 24.8
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 7.6e-30 136.3 165 53.3
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 4.8e-24 117.1 77 71.4
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.2e-22 112.5 100 55.0
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 7.7e-22 109.8 69 68.1
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 8.5e-21 106.3 85 60.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 3.6e-19 100.9 66 83.3
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 2.0e-17 95.1 83 59.0
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 5.3e-15 87.0 195 38.5
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 4.5e-14 84.0 72 59.7
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 8.5e-13 79.7 102 48.0
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.4e-12 79.0 62 64.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 2.7e-11 74.7 103 43.7
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 3.7e-08 64.3 35 88.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.8e-07 62.0 35 82.9
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 5.3e-07 60.5 58 58.6
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 5.3e-07 60.5 36 80.6
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 2.6e-06 58.2 36 86.1
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 4.5e-06 57.4 265 28.3


User provided reference genes

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