Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.7e-203 711.8 373 100.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.3e-104 384.0 369 61.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 5.6e-100 368.6 379 58.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.2e-97 360.9 367 56.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.0e-97 360.1 374 57.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.4e-96 355.1 384 56.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 6.4e-96 355.1 367 58.6
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.2e-94 350.9 365 55.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.7e-94 349.7 386 53.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.0e-93 347.8 376 54.3
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.5e-92 344.0 376 54.5
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.8e-91 339.7 373 57.4
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 8.1e-91 338.2 397 52.1
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 8.9e-90 334.7 381 53.5
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 5.8e-89 332.0 385 51.9
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 1.9e-87 327.0 404 49.5
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.4e-87 326.6 381 54.3
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.4e-87 326.6 385 50.9
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.2e-87 326.2 385 51.4
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 7.1e-87 325.1 379 52.8
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.6e-86 323.9 374 52.4
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.1e-86 323.6 385 51.2
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 6.0e-86 322.0 388 50.8
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 3.6e-83 312.8 388 49.2
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.7e-83 312.4 381 50.4
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 6.2e-83 312.0 391 50.4
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 4.0e-82 309.3 198 84.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 9.0e-82 308.1 386 50.0
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.2e-81 307.8 382 50.5
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 4.4e-81 305.8 397 48.9
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 6.4e-80 302.0 407 46.9
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.4e-79 300.8 372 48.7
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 5.4e-79 298.9 409 46.2
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.4e-79 298.9 372 48.7
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.5e-78 296.2 394 47.5
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.5e-78 296.2 374 49.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 6.0e-78 295.4 389 49.4
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.3e-77 293.5 378 48.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.9e-76 290.4 386 48.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.1e-75 287.0 372 47.6
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.8e-75 286.6 345 51.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.6e-75 286.2 330 53.3
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 4.8e-75 285.8 388 47.7
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.8e-75 285.8 381 46.7
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 6.2e-75 285.4 391 48.6
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.8e-74 283.9 319 55.5
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.4e-74 283.5 381 48.0
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 5.3e-74 282.3 367 52.9
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.2e-73 281.2 382 49.5
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.5e-73 280.8 409 48.7
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 5.8e-73 278.9 414 44.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 3.8e-72 276.2 390 44.4
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.4e-71 273.5 349 52.4
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 3.2e-71 273.1 370 48.1
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 9.3e-71 271.6 414 44.4
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.2e-70 271.2 406 45.1
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.2e-70 271.2 383 46.5
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 4.6e-70 269.2 373 49.9
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 6.0e-70 268.9 407 44.5
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.3e-69 267.7 389 45.5
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 3.9e-69 266.2 381 45.4
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 5.1e-69 265.8 406 43.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 5.1e-69 265.8 376 47.1
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 6.7e-69 265.4 382 48.4
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.3e-68 262.7 387 43.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 7.4e-68 261.9 418 42.6
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.4e-68 261.9 383 44.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.1e-67 260.4 386 45.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.2e-67 258.8 406 43.3
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.1e-66 258.1 388 44.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.8e-66 257.3 384 45.3
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 3.1e-66 256.5 387 44.7
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.2e-65 254.6 403 44.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.2e-65 254.6 372 46.2
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.2e-65 254.6 360 46.1
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.7e-64 250.8 383 45.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.9e-63 247.3 383 44.6
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.7e-62 243.4 396 43.7
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 6.0e-62 242.3 408 42.2
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 7.9e-62 241.9 367 45.2
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.0e-61 241.5 413 42.6
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 5.1e-61 239.2 308 47.1
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.1e-59 233.8 450 39.6
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.8e-59 232.6 216 61.1
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 4.8e-59 232.6 415 40.0
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.8e-58 230.7 384 43.8
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.8e-58 230.7 394 42.1
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 3.1e-58 229.9 362 46.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.1e-58 229.9 443 38.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.1e-58 229.9 409 41.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 4.9e-56 222.6 333 47.4
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.9e-55 220.7 407 40.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.1e-54 217.2 391 41.4
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 2.7e-54 216.9 378 41.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 3.5e-54 216.5 339 45.7
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 6.0e-54 215.7 384 41.7
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 6.0e-54 215.7 382 40.8
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.8e-53 214.2 410 40.7
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.8e-53 214.2 400 40.8
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 3.0e-53 213.4 180 66.7
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.7e-53 212.2 418 40.0
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 4.3e-52 209.5 371 42.6
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 4.3e-52 209.5 371 42.6
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.7e-52 209.1 383 40.7
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.7e-52 209.1 383 40.7
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.7e-52 209.1 383 40.7
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 5.7e-52 209.1 384 45.1
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 9.7e-52 208.4 424 39.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.8e-51 206.8 371 42.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-50 204.1 376 42.6
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.8e-50 204.1 376 42.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.4e-50 203.8 396 40.4
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.5e-49 199.5 370 42.7
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.9e-49 199.1 414 39.6
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.0e-48 198.4 406 39.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 8.5e-48 195.3 365 42.2
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 8.5e-48 195.3 365 42.2
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 4.2e-47 193.0 387 39.5
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 4.2e-47 193.0 387 39.5
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 9.4e-47 191.8 359 40.7
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.6e-46 191.0 374 41.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 6.1e-46 189.1 359 42.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 2.5e-44 183.7 382 40.1
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 6.3e-43 179.1 380 37.6
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.1e-42 175.3 408 37.0
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 3.4e-41 173.3 383 39.4
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.5e-41 172.9 266 45.9
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.8e-40 169.9 353 39.7
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.5e-40 168.7 244 49.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.2e-39 166.4 375 35.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 5.5e-39 166.0 385 36.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.0e-37 161.8 379 37.5
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.2e-35 152.1 413 35.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.1e-34 151.8 340 36.5
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 2.4e-34 150.6 269 41.6
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 2.6e-33 147.1 372 35.8
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.2e-25 121.7 551 27.2
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.9e-24 117.1 233 42.9
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 3.8e-24 116.7 201 40.8
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 5.0e-24 116.3 320 35.3
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 5.0e-16 89.7 155 42.6
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.8e-12 75.5 191 35.6
PGR031G1466 Punica granatum HOM05D008010 ORTHO05D010085 1.5e-07 61.6 236 28.8
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 1.9e-07 61.2 52 67.3
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 7.2e-07 59.3 249 26.9


User provided reference genes

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