Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16650 Coffea canephora HOM05D000622 ORTHO05D028505 2.4e-43 178.7 107 100.0
MSTRG.18833 Avicennia marina HOM05D000622 ORTHO05D000475 9.6e-21 103.6 98 67.3
Solyc09g059310.3 Solanum lycopersicum HOM05D000622 ORTHO05D000475 2.1e-20 102.4 100 75.0
Sopen09g022440 Solanum pennellii HOM05D000622 ORTHO05D000475 2.1e-20 102.4 100 75.0
Rhsim13G0049400 Rhododendron simsii HOM05D000622 ORTHO05D000475 1.8e-19 99.4 101 71.3
Nitab4.5_0001161g0050 Nicotiana tabacum HOM05D000622 ORTHO05D000475 2.6e-18 95.5 94 60.6
Dinv12641 Davidia involucrata HOM05D000622 ORTHO05D000475 1.3e-17 93.2 86 65.1
Dinv19160 Davidia involucrata HOM05D000622 ORTHO05D000475 8.4e-17 90.5 104 64.4
Duzib133G1104 Durio zibethinus HOM05D000622 ORTHO05D000475 1.9e-16 89.4 96 57.3
Duzib211G0378 Durio zibethinus HOM05D000622 ORTHO05D000475 9.3e-16 87.0 96 59.4
Haze_03363 Corylus avellana HOM05D000622 ORTHO05D000475 2.1e-15 85.9 103 55.3
CiPaw.13G049200 Carya illinoinensis HOM05D000622 ORTHO05D000475 4.6e-15 84.7 103 51.5
Manes.13G050000 Manihot esculenta HOM05D000622 ORTHO05D000475 6.0e-15 84.3 101 55.4
PGSC0003DMG400027944 Solanum tuberosum HOM05D000622 ORTHO05D000475 2.3e-14 82.4 97 62.9
MBI07_g27650_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 8.7e-14 80.5 98 54.1
MBI07_g46755_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 8.7e-14 80.5 98 54.1
Nn3g20052 Nelumbo nucifera HOM05D000622 ORTHO05D000475 8.7e-14 80.5 103 53.4
PGSC0003DMG400022032 Solanum tuberosum HOM05D000622 ORTHO05D028505 8.7e-14 80.5 95 55.8
DCAR_000520 Daucus carota HOM05D000622 ORTHO05D000475 1.1e-13 80.1 103 49.5
Atru.chr6.1433 Acer truncatum HOM05D000622 ORTHO05D000475 1.5e-13 79.7 98 63.3
GSVIVG01003923001 Vitis vinifera HOM05D000622 ORTHO05D000475 1.5e-13 79.7 106 58.5
TWI36G0101 Tripterygium wilfordii HOM05D000622 ORTHO05D000475 5.6e-13 77.8 96 55.2
MBI11_g07412_MAGBIO Magnolia biondii HOM05D000622 ORTHO05D000475 3.7e-12 75.1 92 53.3
unitig_749.g13593 Utricularia gibba HOM05D000622 ORTHO05D000475 6.2e-12 74.3 100 52.0
Nitab4.5_0003020g0160 Nicotiana tabacum HOM05D000622 ORTHO05D000475 1.1e-11 73.6 95 61.1
TWI18G1062 Tripterygium wilfordii HOM05D000622 ORTHO05D000475 1.4e-11 73.2 96 54.2
Gohir.A11G139900 Gossypium hirsutum HOM05D000622 ORTHO05D000475 1.8e-11 72.8 93 59.1
CAN.G181.56 Capsicum annuum HOM05D000622 ORTHO05D028505 6.9e-11 70.9 88 54.5
unitig_26.g9436 Utricularia gibba HOM05D000622 ORTHO05D000475 6.9e-11 70.9 58 67.2
Lj1A89T72 Lonicera japonica HOM05D000622 ORTHO05D000475 1.2e-10 70.1 101 51.5
Ciclev10020020m.g Citrus clementina HOM05D000622 ORTHO05D000475 2.6e-10 68.9 95 62.1
Gorai.004G059100 Gossypium raimondii HOM05D000622 ORTHO05D000475 2.6e-10 68.9 97 55.7
Actinidia09463 Actinidia chinensis HOM05D000622 ORTHO05D000475 1.0e-09 67.0 94 51.1
DCAR_012673 Daucus carota HOM05D000622 ORTHO05D000475 1.3e-09 66.6 103 53.4
Prupe.8G197600 Prunus persica HOM05D000622 ORTHO05D000475 1.3e-09 66.6 105 46.7
COL.COLO4_08648 Corchorus olitorius HOM05D000622 ORTHO05D000475 1.7e-09 66.2 96 55.2
MD05G1170400 Malus domestica HOM05D000622 ORTHO05D000475 2.2e-09 65.9 98 45.9
Gohir.A08G047500 Gossypium hirsutum HOM05D000622 ORTHO05D000475 2.9e-09 65.5 94 56.4
Sabra02G0187700 Salix brachista HOM05D000622 ORTHO05D000475 4.9e-09 64.7 119 45.4
Peaxi162Scf00068g02114 Petunia axillaris HOM05D000622 ORTHO05D000475 6.5e-09 64.3 99 59.6
Actinidia30045 Actinidia chinensis HOM05D000622 ORTHO05D000475 8.4e-09 63.9 107 43.9
Cpa.g.sc34.104 Carica papaya HOM05D000622 ORTHO05D000475 8.4e-09 63.9 98 57.1
Solyc06g007780.3 Solanum lycopersicum HOM05D000622 ORTHO05D000475 1.4e-08 63.2 95 49.5
Sopen06g002660 Solanum pennellii HOM05D000622 ORTHO05D000475 1.4e-08 63.2 95 49.5
FvH4_2g18460 Fragaria vesca HOM05D000622 ORTHO05D000475 5.5e-08 61.2 131 37.4
FAN24G0783 Fragaria x ananassa HOM05D000622 ORTHO05D000475 5.5e-08 61.2 131 37.4
Nitab4.5_0002641g0130 Nicotiana tabacum HOM05D000622 ORTHO05D028505 5.5e-08 61.2 102 45.1
TWI75G1790 Tripterygium wilfordii HOM05D000622 ORTHO05D000475 7.1e-08 60.8 96 55.2
FAN27G1046 Fragaria x ananassa HOM05D000622 ORTHO05D000475 9.3e-08 60.5 131 37.4
FAN15G2597 Fragaria x ananassa HOM05D000622 ORTHO05D000475 1.6e-07 59.7 83 47.0
Manes.12G047900 Manihot esculenta HOM05D000622 ORTHO05D000475 1.6e-07 59.7 101 55.4
Actinidia23762 Actinidia chinensis HOM05D000622 ORTHO05D000475 2.7e-07 58.9 94 55.3
Eucgr.K02132 Eucalyptus grandis HOM05D000622 ORTHO05D000475 2.7e-07 58.9 99 41.4
Gohir.D08G057900 Gossypium hirsutum HOM05D000622 ORTHO05D000475 3.5e-07 58.5 95 58.9
Ca_03469_v3 Cicer arietinum L. HOM05D000622 ORTHO05D000475 4.6e-07 58.2 119 38.7
Thecc.01G218900 Theobroma cacao HOM05D000622 ORTHO05D000475 4.6e-07 58.2 96 52.1
CSS0005778 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 6.0e-07 57.8 49 69.4
HPP92_006217 Vanilla planifolia HOM05D000622 ORTHO05D000475 6.0e-07 57.8 96 49.0
arahy.Tifrunner.gnm1.ann1.LC6LGZ Arachis hypogaea HOM05D000622 ORTHO05D000475 7.9e-07 57.4 98 43.9
Potri.002G246600 Populus trichocarpa HOM05D000622 ORTHO05D000475 1.0e-06 57.0 138 36.2
RcHm_v2.0_Chr6g0283941 Rosa chinensis HOM05D000622 ORTHO05D000475 1.0e-06 57.0 135 39.3
CSS0007219 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 3.0e-06 55.5 110 43.6
CSS0027911 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 3.0e-06 55.5 110 43.6
arahy.Tifrunner.gnm1.ann1.F6ZUER Arachis hypogaea HOM05D000622 ORTHO05D000475 3.9e-06 55.1 95 43.2
Oeu059599.1 Olea europaea HOM05D000784 ORTHO05D023015 3.9e-06 55.1 57 57.9
Lalb_Chr19g0125881 Lupinus albus HOM05D000622 ORTHO05D000475 8.7e-06 53.9 111 39.6
unitig_899.g15406 Utricularia gibba HOM05D000622 ORTHO05D000475 8.7e-06 53.9 103 43.7
Zm00001eb181100 Zea mays HOM05D000622 ORTHO05D000475 8.7e-06 53.9 89 40.4


User provided reference genes

Program Settings