Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 1.1e-289 999.2 503 100.0
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 1.9e-175 619.8 481 65.5
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 5.1e-173 611.7 423 70.7
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.6e-171 606.7 419 69.7
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 4.8e-171 605.1 484 63.8
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 1.1e-170 604.0 425 69.2
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 2.4e-170 602.8 425 69.4
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 3.1e-170 602.4 424 70.0
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.0e-169 599.7 445 66.3
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 4.5e-169 598.6 465 65.8
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.2e-168 596.3 484 62.2
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 2.5e-167 592.8 453 65.3
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 2.1e-166 589.7 501 61.3
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 1.9e-164 583.2 473 64.1
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 2.8e-163 579.3 422 67.5
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 1.1e-162 577.4 500 60.6
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 2.0e-161 573.2 478 61.3
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 7.6e-161 571.2 425 65.2
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 1.0e-160 570.9 414 67.4
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 2.9e-160 569.3 406 68.2
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 5.0e-160 568.5 425 64.9
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 1.4e-159 567.0 418 65.3
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 4.2e-159 565.5 469 60.3
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 9.3e-159 564.3 423 65.2
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 2.1e-158 563.1 550 54.7
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 2.7e-158 562.8 434 65.0
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 7.9e-158 561.2 497 59.2
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 1.5e-156 557.0 500 57.6
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 5.7e-156 555.1 420 64.3
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 1.6e-155 553.5 423 64.1
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 8.2e-155 551.2 452 61.5
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 3.1e-154 549.3 444 60.8
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 3.1e-154 549.3 457 59.7
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 4.1e-154 548.9 451 61.0
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 4.1e-154 548.9 453 58.5
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 6.9e-154 548.1 456 61.6
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.2e-153 547.4 420 62.9
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 2.0e-153 546.6 460 60.4
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 2.0e-153 546.6 464 61.0
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 4.5e-153 545.4 434 62.0
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 4.5e-153 545.4 465 58.7
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 1.3e-152 543.9 500 57.4
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 2.2e-152 543.1 427 61.8
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 2.2e-152 543.1 500 57.8
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 2.9e-152 542.7 484 57.0
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 3.8e-152 542.3 427 62.3
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 5.0e-152 542.0 500 56.8
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 5.0e-152 542.0 478 58.6
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 6.5e-152 541.6 503 57.1
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 6.5e-152 541.6 492 58.1
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 1.1e-151 540.8 475 59.4
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 1.4e-151 540.4 422 62.3
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 1.4e-151 540.4 502 57.8
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 2.5e-151 539.7 461 60.1
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 3.2e-151 539.3 465 59.1
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 3.2e-151 539.3 454 57.9
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 5.5e-151 538.5 419 64.0
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 9.4e-151 537.7 420 62.1
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 3.6e-150 535.8 447 60.9
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 1.4e-149 533.9 417 60.9
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 1.8e-149 533.5 422 59.7
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 6.7e-149 531.6 426 62.9
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 6.7e-149 531.6 460 60.0
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 6.7e-149 531.6 500 57.0
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 2.0e-148 530.0 422 59.5
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 2.0e-148 530.0 457 58.2
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 9.7e-148 527.7 489 57.3
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 2.8e-147 526.2 489 57.1
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 1.8e-146 523.5 457 60.6
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.8e-146 523.5 416 60.3
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 6.9e-146 521.5 476 58.6
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 2.7e-142 509.6 433 59.1
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 6.7e-141 505.0 477 55.3
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 8.8e-141 504.6 426 59.6
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 2.0e-140 503.4 456 53.3
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 3.3e-140 502.7 394 61.7
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 4.4e-140 502.3 423 61.2
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 2.8e-139 499.6 477 55.8
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 2.8e-139 499.6 474 56.5
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.4e-138 497.3 420 56.4
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 1.7e-136 490.3 481 54.9
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 4.2e-135 485.7 414 60.4
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 1.2e-134 484.2 406 58.9
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 4.7e-134 482.3 370 62.7
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 1.2e-132 477.6 420 56.4
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 2.8e-131 473.0 423 55.3
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 8.2e-131 471.5 461 53.1
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 8.2e-131 471.5 420 55.5
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 1.1e-130 471.1 448 54.0
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 5.3e-130 468.8 374 59.9
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 1.1e-127 461.1 417 56.4
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 4.2e-127 459.1 370 59.2
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 1.2e-126 457.6 367 59.7
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 4.7e-118 429.1 378 60.3
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.6e-110 404.1 420 49.3
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 4.4e-108 396.0 437 48.3
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.7e-107 392.9 437 48.3
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.9e-103 380.6 285 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 1.6e-97 360.9 420 45.0
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 6.6e-96 355.5 439 43.5
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 1.1e-93 348.2 177 99.4
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 4.1e-90 336.3 423 41.8
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.0e-88 330.1 303 53.1
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 9.5e-87 325.1 222 68.9
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 2.8e-86 323.6 403 44.2
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 8.1e-86 322.0 392 46.4
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 1.4e-74 284.6 264 56.1
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 5.4e-74 282.7 260 56.5
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 1.8e-64 251.1 234 56.8
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.4e-53 214.9 221 49.3
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 8.7e-48 195.7 443 32.1
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 4.1e-45 186.8 456 30.9
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 4.1e-37 160.2 99 74.7
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 1.0e-32 145.6 101 65.3
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 6.7e-32 142.9 107 60.7
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.4e-29 135.2 116 56.0
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.5e-28 131.7 113 60.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.2e-26 122.9 432 25.0
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.5e-23 115.2 82 67.1
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 2.0e-23 114.8 149 48.3
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 4.0e-16 90.5 90 46.7
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 1.2e-12 79.0 75 52.0
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 7.7e-12 76.3 54 74.1
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.1e-10 72.4 69 52.2
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 4.2e-10 70.5 70 55.7
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.6e-09 68.6 51 56.9


User provided reference genes

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