Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1818.1 944 100.0
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1333.9 941 72.6
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1316.6 954 71.6
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1300.4 950 70.5
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1298.9 950 70.4
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1288.1 941 69.0
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1285.8 949 69.5
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1273.8 933 70.5
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1248.4 963 66.5
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1234.6 931 67.9
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1233.0 932 67.8
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1229.2 937 66.4
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1227.6 932 67.6
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1223.0 955 66.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1218.0 928 67.3
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1209.5 929 66.8
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1208.0 951 64.7
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1203.3 928 67.1
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1190.6 949 64.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1188.7 944 63.7
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1187.6 951 63.7
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1184.9 951 63.5
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1184.1 946 63.3
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1179.9 954 63.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1178.7 935 64.1
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1177.9 941 63.8
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1177.9 949 64.7
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1176.4 954 63.5
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1172.1 952 63.0
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1170.6 947 64.0
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1168.7 946 63.0
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1159.8 960 61.9
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1158.3 947 61.7
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1151.0 948 63.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1150.2 960 62.0
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1148.3 936 63.6
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1144.0 951 62.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1143.6 949 62.7
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1141.7 940 62.7
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1137.9 948 62.1
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1137.9 936 63.6
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1136.3 961 61.1
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1135.2 941 61.6
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1130.2 943 63.0
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1125.9 933 61.3
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1125.5 942 61.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1124.0 940 63.3
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1122.5 936 61.8
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1117.8 953 60.3
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1112.1 938 61.3
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1107.8 935 61.9
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1107.4 948 59.8
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1106.3 941 61.1
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1105.5 940 61.2
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1105.5 942 60.8
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1104.7 939 60.7
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1100.9 999 59.7
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1093.2 948 60.2
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1091.6 911 61.0
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1091.3 940 60.5
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1089.7 946 60.5
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1087.8 933 60.9
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1082.8 942 60.6
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1082.0 943 59.7
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1081.6 934 59.7
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1081.2 911 60.5
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1080.1 932 62.4
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1079.7 934 59.5
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1079.7 934 59.5
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 6.5e-312 1074.3 942 59.7
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 2.2e-310 1068.9 856 64.7
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 2.4e-309 1065.4 958 57.4
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 5.1e-307 1057.7 938 59.3
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 8.1e-305 1050.4 953 58.6
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.8e-304 1049.3 998 57.1
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.1e-301 1040.0 941 57.8
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.2e-297 1026.5 910 59.5
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 3.6e-297 1025.0 940 57.7
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 1.8e-296 1022.7 945 57.7
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.4e-295 1018.1 837 61.4
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 8.4e-294 1013.8 947 57.4
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 3.0e-291 1005.4 768 65.4
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 2.1e-289 999.2 947 56.6
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.5e-279 966.5 941 55.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.1e-272 942.2 833 61.1
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.7e-268 929.1 806 59.6
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 2.0e-263 912.9 686 68.5
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 5.9e-263 911.4 932 52.5
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 2.8e-257 892.5 739 62.1
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 1.1e-253 880.6 818 55.9
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.2e-246 856.3 940 49.4
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.3e-225 787.3 950 46.3
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 2.5e-221 773.1 656 62.5
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.5e-197 694.1 972 42.4
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 3.9e-190 669.5 949 41.0
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.6e-175 620.9 942 39.9
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 5.4e-168 595.9 487 60.4
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.3e-147 526.2 426 66.7
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 2.1e-143 514.2 466 62.4
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 6.1e-143 512.7 739 41.5
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.9e-141 507.7 866 37.1
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-137 495.4 403 63.5
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 3.3e-133 480.3 422 58.1
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 5.0e-129 466.5 925 32.1
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 8.5e-129 465.7 875 36.1
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 3.0e-126 457.2 452 56.4
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.2e-112 410.6 424 56.1
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.9e-86 322.8 264 62.1
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.4e-68 263.1 199 64.3
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 4.3e-40 171.0 330 36.1
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.7e-39 167.9 336 35.7
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 5.3e-38 164.1 463 29.8
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.6e-37 161.8 345 33.0
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.5e-35 155.2 144 54.9
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-28 132.9 120 58.3
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.8e-28 131.3 134 54.5
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.1e-24 119.8 157 51.0
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.7e-24 116.7 248 34.7
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-22 112.1 130 50.0
MCO15G701 Micromonas commoda HOM05D004953 ORTHO05D006193 3.1e-22 111.7 913 22.7
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 6.9e-22 110.5 108 51.9
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-20 106.7 66 72.7
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.8e-20 104.8 135 47.4
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.5e-19 100.9 73 64.4
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 7.2e-19 100.5 73 64.4
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 1.6e-18 99.4 73 64.4
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 7.9e-18 97.1 73 61.6
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-17 96.3 73 61.6
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.7e-16 90.9 60 76.7
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.2e-15 89.0 61 63.9
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.7e-15 88.2 60 76.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.2e-15 87.0 61 63.9
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-11 76.3 46 71.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-11 76.3 55 61.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.9e-11 75.9 180 31.1
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-10 72.8 55 60.0
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.1e-10 70.9 55 58.2
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.4e-09 69.7 172 30.2
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 4.4e-08 64.7 60 51.7
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.8e-07 61.2 38 68.4
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 4.8e-07 61.2 38 71.1
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.1e-06 58.2 62 58.1


User provided reference genes

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