Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.9e-94 348.6 179 100.0
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 7.8e-76 287.3 179 81.6
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 9.6e-74 280.4 178 80.3
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 1.3e-73 280.0 179 81.0
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 8.1e-73 277.3 179 78.8
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 5.3e-72 274.6 179 78.8
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 1.2e-71 273.5 176 77.8
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 1.2e-71 273.5 178 78.7
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 3.4e-71 271.9 179 78.2
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.5e-71 271.6 179 78.8
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.5e-71 271.6 179 78.8
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 9.9e-71 270.4 177 75.7
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 1.3e-70 270.0 180 78.3
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 2.9e-70 268.9 179 78.2
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 4.9e-70 268.1 179 77.1
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 6.4e-70 267.7 178 77.0
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 1.1e-69 266.9 182 76.4
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 1.1e-69 266.9 177 79.1
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 1.1e-69 266.9 180 78.3
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 3.2e-69 265.4 178 77.0
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 4.2e-69 265.0 179 78.2
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 4.2e-69 265.0 179 76.0
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 1.6e-68 263.1 177 75.1
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 1.6e-68 263.1 171 76.6
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.1e-68 262.7 179 76.0
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 2.7e-68 262.3 179 75.4
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 3.5e-68 261.9 179 76.0
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 3.5e-68 261.9 179 76.5
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 6.0e-68 261.2 177 75.1
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 6.0e-68 261.2 177 75.1
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 6.7e-67 257.7 178 74.2
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.3e-66 255.4 177 75.1
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 3.3e-66 255.4 178 73.0
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 7.4e-66 254.2 179 74.3
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 9.6e-66 253.8 180 72.8
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 1.3e-65 253.4 177 74.6
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 1.3e-65 253.4 177 74.6
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.6e-65 253.1 178 72.5
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.7e-65 251.9 177 74.6
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 8.1e-65 250.8 174 75.3
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.8e-64 249.6 177 73.4
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 3.1e-64 248.8 178 71.9
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 3.1e-64 248.8 167 75.4
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 4.0e-64 248.4 176 74.4
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.0e-64 248.4 178 71.9
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 6.9e-64 247.7 177 73.4
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 9.0e-64 247.3 179 71.5
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 9.0e-64 247.3 178 71.9
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 9.0e-64 247.3 178 71.3
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 1.2e-63 246.9 179 70.9
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 2.0e-63 246.1 164 76.8
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 3.4e-63 245.4 174 73.0
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 5.8e-63 244.6 179 70.4
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 7.6e-63 244.2 164 78.0
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 3.8e-62 241.9 180 71.1
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 3.8e-62 241.9 178 68.5
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 6.5e-62 241.1 182 71.4
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 8.4e-62 240.7 135 88.1
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.1e-61 240.4 174 73.0
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 1.1e-61 240.4 147 81.6
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 1.9e-61 239.6 165 75.2
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 1.9e-61 239.6 166 71.7
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 9.3e-61 237.3 177 70.1
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 1.2e-60 236.9 177 70.1
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 1.6e-60 236.5 172 69.8
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.1e-60 236.1 178 69.7
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 4.6e-60 235.0 179 70.9
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 7.9e-60 234.2 181 68.0
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 7.9e-60 234.2 208 63.5
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 3.9e-59 231.9 172 68.6
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 8.7e-59 230.7 172 68.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 8.7e-59 230.7 179 70.9
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 1.5e-58 229.9 174 70.7
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 1.9e-58 229.6 181 67.4
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 2.5e-58 229.2 177 68.9
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 4.3e-58 228.4 177 68.9
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 7.4e-58 227.6 177 67.2
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.3e-57 226.9 138 81.2
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 2.8e-57 225.7 181 66.9
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 3.7e-57 225.3 172 66.3
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 3.7e-57 225.3 173 67.6
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 3.7e-57 225.3 138 81.2
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 8.2e-57 224.2 181 66.9
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.4e-56 223.4 172 68.6
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.9e-56 221.1 178 66.3
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 6.9e-56 221.1 178 66.3
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 9.0e-56 220.7 138 81.2
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 2.6e-55 219.2 133 82.0
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 5.8e-55 218.0 174 66.7
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 7.6e-55 217.6 182 66.5
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 2.2e-54 216.1 236 54.7
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.6e-52 209.9 137 76.6
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 6.1e-52 208.0 145 71.7
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 6.1e-52 208.0 145 71.7
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.3e-51 206.8 146 71.2
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 2.3e-51 206.1 145 71.0
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 2.3e-51 206.1 145 71.0
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 3.3e-50 202.2 124 81.5
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 3.3e-50 202.2 160 67.5
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 4.3e-50 201.8 183 63.4
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 4.3e-50 201.8 179 64.8
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 9.7e-50 200.7 144 70.8
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 4.8e-49 198.4 166 65.1
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 1.4e-48 196.8 179 59.8
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.4e-48 196.8 181 62.4
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 1.8e-48 196.4 164 66.5
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 5.3e-48 194.9 146 68.5
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 7.7e-47 191.0 107 87.9
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 3.0e-43 179.1 143 67.1
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 4.3e-42 175.3 126 70.6
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.7e-41 173.3 125 70.4
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.3e-41 171.4 179 57.0
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 6.9e-40 167.9 175 54.3
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 3.4e-39 165.6 143 59.4
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 5.5e-37 158.3 179 54.2
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 7.2e-37 157.9 188 49.5
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 2.3e-35 152.9 187 50.8
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 7.4e-34 147.9 113 63.7
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 1.5e-31 140.2 143 53.8
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 5.7e-26 121.7 150 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 9.7e-26 120.9 104 59.6
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 1.3e-25 120.6 135 49.6
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 2.8e-25 119.4 99 59.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 8.2e-25 117.9 123 54.5
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 1.0e-22 110.9 80 68.8
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 6.5e-22 108.2 72 76.4
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 4.4e-18 95.5 85 57.6
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-17 93.2 137 40.9
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 2.2e-17 93.2 83 62.7
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 4.7e-12 75.5 180 32.2
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.1e-08 64.3 60 60.0
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 9.1e-08 61.2 121 38.8
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 2.3e-06 56.6 35 74.3
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 2.9e-06 56.2 165 32.1
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 6.6e-06 55.1 43 69.8


User provided reference genes

Program Settings