Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.5e-138 495.4 240 100.0
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 4.4e-82 308.5 220 63.2
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 7.5e-82 307.8 220 62.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 9.8e-82 307.4 217 64.1
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 5.4e-80 301.6 225 61.8
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.5e-77 293.5 223 61.4
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 4.3e-77 292.0 202 66.3
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 9.5e-77 290.8 221 59.7
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 3.6e-76 288.9 221 58.8
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 4.0e-75 285.4 230 58.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 6.8e-75 284.6 225 61.8
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.4e-74 282.3 230 58.3
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.4e-74 282.3 225 60.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 5.8e-74 281.6 227 59.9
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 5.8e-74 281.6 221 60.6
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 7.5e-74 281.2 230 58.3
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.7e-73 280.0 230 57.8
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.7e-73 280.0 229 58.5
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.2e-73 279.6 226 58.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.9e-73 279.3 224 59.8
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.7e-73 278.9 226 57.5
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.9e-73 278.5 220 57.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 8.3e-73 277.7 221 59.7
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 8.3e-73 277.7 226 58.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.4e-72 276.9 227 58.1
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.4e-72 276.9 198 62.1
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.4e-72 276.9 229 57.6
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.4e-72 276.2 224 59.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.4e-72 276.2 223 59.2
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 3.2e-72 275.8 225 57.3
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 4.1e-72 275.4 223 58.3
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 7.1e-72 274.6 227 58.1
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.1e-72 274.6 200 61.0
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 7.1e-72 274.6 221 58.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 9.2e-72 274.2 229 57.6
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 9.2e-72 274.2 220 56.8
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.2e-71 273.9 228 55.3
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.7e-71 272.7 228 56.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 3.5e-71 272.3 228 56.6
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 6.0e-71 271.6 221 59.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 6.0e-71 271.6 228 56.6
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.3e-70 270.4 224 59.4
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.3e-70 269.6 227 58.6
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.3e-70 269.6 228 56.6
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.3e-70 269.6 230 55.7
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 3.0e-70 269.2 230 55.7
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 6.6e-70 268.1 230 55.2
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.1e-69 267.3 226 55.3
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.1e-69 267.3 227 56.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 2.5e-69 266.2 223 56.1
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 5.6e-69 265.0 230 56.1
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.5e-69 264.2 228 56.1
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.6e-68 263.5 226 54.0
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-68 262.7 235 55.3
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.7e-68 261.9 235 55.7
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 6.2e-68 261.5 228 57.9
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 6.2e-68 261.5 231 53.7
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 8.1e-68 261.2 225 56.4
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-67 260.8 247 55.5
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.3e-67 259.6 235 55.7
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 3.4e-66 255.8 225 53.8
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 3.4e-66 255.8 222 55.0
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 3.4e-66 255.8 218 54.1
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 4.4e-66 255.4 224 55.4
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 3.8e-65 252.3 215 53.0
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 4.9e-65 251.9 215 51.2
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 6.4e-65 251.5 225 56.9
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 8.4e-65 251.1 215 53.5
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.1e-64 250.8 215 52.1
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.9e-64 250.0 215 52.1
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.4e-64 249.6 215 51.2
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 2.4e-64 249.6 224 51.3
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.2e-64 249.2 225 54.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.1e-64 248.8 215 50.7
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.4e-64 248.4 224 50.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.2e-63 247.3 215 51.2
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.1e-63 246.5 215 50.2
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.5e-63 245.7 225 51.6
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 3.5e-63 245.7 215 51.6
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 3.5e-63 245.7 217 51.6
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 4.6e-63 245.4 215 51.6
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.0e-63 245.0 221 52.9
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 6.0e-63 245.0 223 51.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.0e-63 245.0 227 53.3
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 6.0e-63 245.0 215 52.1
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.0e-62 244.2 221 52.5
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-62 243.8 222 53.2
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-62 243.8 224 50.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.3e-62 243.8 224 54.0
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 3.0e-62 242.7 228 54.4
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 4.3e-61 238.8 221 49.3
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.6e-61 237.7 201 58.7
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 8.1e-60 234.6 221 48.9
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.7e-54 216.9 217 51.6
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 5.3e-51 205.3 224 44.6
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 2.9e-49 199.5 222 48.2
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 4.9e-49 198.7 217 50.2
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.1e-48 197.6 218 49.5
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 6.0e-47 191.8 250 41.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 3.9e-46 189.1 221 41.2
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 3.9e-46 189.1 144 56.2
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.5e-45 187.2 160 56.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.1e-44 181.4 220 41.8
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 1.8e-43 180.3 224 41.1
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.0e-43 179.1 221 42.5
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.5e-42 177.2 236 40.3
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 4.5e-42 175.6 236 40.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.9e-41 172.9 263 38.8
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-40 170.6 232 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 4.2e-40 169.1 232 39.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.5e-40 168.7 229 41.9
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.2e-39 167.5 235 37.9
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 3.5e-39 166.0 233 37.8
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.6e-39 165.6 237 37.6
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.0e-39 165.2 248 35.9
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 3.0e-38 162.9 259 34.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.1e-38 162.2 222 42.3
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 3.3e-37 159.5 166 42.8
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 3.3e-37 159.5 166 42.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.3e-37 159.5 224 36.2
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.3e-36 157.5 252 37.3
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.6e-36 157.1 267 36.3
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 4.8e-36 155.6 225 38.2
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-35 153.7 250 37.2
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.4e-35 153.3 267 35.6
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 9.0e-35 151.4 190 41.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 2.0e-34 150.2 262 34.7
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.6e-34 149.8 228 37.7
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 4.5e-34 149.1 207 39.1
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.3e-33 147.5 233 35.2
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.4e-32 144.1 233 34.8
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.9e-32 143.7 108 54.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.9e-32 143.7 248 33.1
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.5e-32 142.1 222 39.2
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-30 136.3 222 38.3
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.5e-29 134.0 235 34.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 2.8e-28 129.8 145 44.1
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 4.8e-28 129.0 223 34.1
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 9.0e-27 124.8 151 41.1
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.5e-26 124.0 220 30.9
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.5e-26 124.0 152 40.1
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.6e-26 123.2 140 43.6
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.4e-26 122.9 254 28.7
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.3e-25 120.9 160 38.1
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.7e-25 120.6 254 29.9
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.9e-24 117.1 219 31.5
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 7.2e-24 115.2 312 27.6
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-23 114.4 135 45.9
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.7e-23 113.2 97 55.7
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.9e-23 111.7 135 44.4
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 3.0e-22 109.8 159 35.2
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 5.1e-22 109.0 164 39.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.5e-21 106.7 170 32.9
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 5.7e-21 105.5 143 40.6
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 5.7e-21 105.5 152 33.6
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.9e-14 82.8 77 45.5
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.0e-13 80.5 194 32.0
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.6e-13 80.1 199 25.6
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.7e-13 79.0 213 30.0
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.2e-12 77.0 109 35.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-09 67.8 105 37.1
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-08 64.7 82 39.0
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.4e-08 64.3 67 43.3


User provided reference genes

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