Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 8.8e-20 99.4 52 100.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.6e-19 97.8 52 98.1
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 6.1e-13 76.6 52 75.0
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.4e-12 75.5 52 75.0
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.4e-12 75.5 52 75.0
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.4e-12 75.5 52 75.0
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 3.0e-12 74.3 51 74.5
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.0e-12 74.3 52 73.1
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.0e-12 73.9 52 73.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.0e-12 73.9 52 73.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.6e-11 71.2 62 64.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.4e-11 70.5 52 71.2
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.4e-11 70.5 62 64.5
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 7.5e-11 69.7 64 64.1
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 9.8e-11 69.3 62 62.9
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.3e-10 68.9 62 64.5
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.3e-10 68.9 62 64.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.3e-10 68.9 62 64.5
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.7e-10 68.6 62 64.5
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.2e-10 68.2 62 62.9
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.2e-10 68.2 62 64.5
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.2e-10 68.2 62 64.5
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.8e-10 67.8 62 61.3
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.8e-10 67.8 62 64.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.8e-10 67.8 62 62.9
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 3.7e-10 67.4 62 64.5
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.8e-10 67.0 62 62.9
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 4.8e-10 67.0 62 64.5
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 6.3e-10 66.6 62 62.9
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 8.3e-10 66.2 62 61.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 8.3e-10 66.2 62 61.3
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.1e-09 65.9 62 62.9
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 3.1e-09 64.3 63 58.7
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 3.1e-09 64.3 63 58.7
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.1e-09 64.3 62 61.3
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 5.4e-09 63.5 41 78.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 5.4e-09 63.5 62 58.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.2e-08 62.4 62 61.3
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.5e-08 60.8 34 82.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 4.5e-08 60.5 62 61.3
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.5e-08 60.5 57 63.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 4.5e-08 60.5 63 58.7
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 7.7e-08 59.7 63 60.3
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 7.7e-08 59.7 44 68.2
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.0e-07 59.3 63 60.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.3e-07 58.9 62 59.7
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.3e-07 58.9 63 60.3
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.3e-07 58.9 63 60.3
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.7e-07 58.5 61 59.0
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.2e-07 58.2 63 60.3
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.2e-07 58.2 44 65.9
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.9e-07 57.8 57 59.6
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.9e-07 57.8 62 59.7
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.9e-07 57.8 62 59.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.8e-07 57.4 50 62.0
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.8e-07 57.4 63 58.7
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 5.0e-07 57.0 51 66.7
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.0e-07 57.0 52 59.6
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 6.5e-07 56.6 51 66.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.1e-06 55.8 62 58.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.1e-06 55.8 51 64.7
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.5e-06 55.5 52 73.1
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.9e-06 55.1 64 56.2
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.9e-06 55.1 52 73.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 2.5e-06 54.7 48 64.6
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.5e-06 54.7 63 54.0
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.2e-06 54.3 61 55.7
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.2e-06 53.9 54 59.3
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 4.2e-06 53.9 52 73.1
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 4.2e-06 53.9 62 58.1
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 7.2e-06 53.1 54 61.1
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 9.5e-06 52.8 62 54.8


User provided reference genes

Program Settings