Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 7.4e-75 284.3 200 100.0
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 1.4e-41 173.7 94 91.5
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 9.8e-35 151.0 172 48.8
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.1e-30 137.5 185 42.7
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 8.0e-29 131.3 86 74.4
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 9.8e-27 124.4 109 57.8
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 6.4e-26 121.7 93 62.4
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 8.3e-26 121.3 86 65.1
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 1.1e-25 120.9 93 61.3
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.9e-25 120.2 93 61.3
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 2.4e-25 119.8 86 65.1
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 3.2e-25 119.4 93 60.2
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 7.0e-25 118.2 109 55.0
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 9.2e-25 117.9 86 66.3
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 9.2e-25 117.9 93 60.2
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 9.2e-25 117.9 93 60.2
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 2.7e-24 116.3 88 63.6
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 3.5e-24 115.9 85 67.1
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 4.6e-24 115.5 149 43.0
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 7.8e-24 114.8 105 57.1
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 7.8e-24 114.8 86 62.8
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 1.7e-23 113.6 93 58.1
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 2.3e-23 113.2 79 67.1
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 2.3e-23 113.2 93 58.1
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 3.0e-23 112.8 86 59.3
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 5.0e-23 112.1 81 66.7
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 2.5e-22 109.8 93 55.9
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 3.3e-22 109.4 109 50.5
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 4.3e-22 109.0 90 61.1
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 4.3e-22 109.0 153 39.9
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 5.6e-22 108.6 84 64.3
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 7.3e-22 108.2 86 59.3
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 1.2e-21 107.5 93 52.7
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 1.6e-21 107.1 89 55.1
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 2.8e-21 106.3 93 54.8
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 4.7e-21 105.5 84 61.9
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 6.2e-21 105.1 83 60.2
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 6.2e-21 105.1 90 60.0
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 8.1e-21 104.8 84 61.9
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 1.1e-20 104.4 91 52.7
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.1e-20 104.4 83 60.2
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 2.3e-20 103.2 90 54.4
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 2.3e-20 103.2 95 52.6
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 4.0e-20 102.4 86 55.8
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 5.2e-20 102.1 86 57.0
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 6.8e-20 101.7 93 52.7
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 6.8e-20 101.7 93 51.6
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.2e-19 100.9 84 58.3
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 1.2e-19 100.9 90 56.7
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 1.2e-19 100.9 84 59.5
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 1.5e-19 100.5 89 55.1
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.5e-19 100.5 93 50.5
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 1.5e-19 100.5 93 50.5
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 2.0e-19 100.1 90 56.7
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 4.4e-19 99.0 92 51.1
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 5.8e-19 98.6 104 46.2
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 7.5e-19 98.2 88 53.4
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 7.5e-19 98.2 89 57.3
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 9.9e-19 97.8 91 52.7
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 9.9e-19 97.8 90 54.4
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 1.3e-18 97.4 95 47.4
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.7e-18 97.1 90 50.0
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 2.2e-18 96.7 89 49.4
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 2.2e-18 96.7 82 54.9
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 2.2e-18 96.7 92 52.2
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 2.9e-18 96.3 83 56.6
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 2.9e-18 96.3 85 57.6
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 3.7e-18 95.9 88 52.3
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 4.9e-18 95.5 78 57.7
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 4.9e-18 95.5 86 54.7
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.4e-17 94.0 93 49.5
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.4e-17 94.0 108 46.3
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.4e-17 94.0 108 46.3
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 4.1e-17 92.4 83 51.8
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 5.4e-17 92.0 66 66.7
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 2.7e-16 89.7 84 53.6
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 2.7e-16 89.7 85 50.6
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 2.7e-16 89.7 62 69.4
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 3.5e-16 89.4 81 54.3
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 3.5e-16 89.4 80 53.8
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 3.5e-16 89.4 82 51.2
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 1.3e-15 87.4 81 54.3
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 6.6e-15 85.1 81 51.9
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.6e-13 80.5 88 44.3
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 6.2e-13 78.6 68 57.4
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 1.4e-12 77.4 65 60.0
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 1.4e-12 77.4 62 58.1
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 1.8e-12 77.0 62 56.5
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 1.8e-12 77.0 92 43.5
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 4.0e-12 75.9 65 53.8
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 3.8e-10 69.3 76 42.1
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 4.9e-10 68.9 72 44.4
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 1.0e-07 61.2 62 45.2
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 9.6e-06 54.7 64 43.8


User provided reference genes

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