Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 0.0e+00 1468.0 827 100.0
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 4.7e-240 835.1 801 59.4
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.6e-232 810.1 814 53.1
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.0e-231 807.4 814 52.9
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.7e-230 801.6 788 53.9
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.8e-228 796.6 788 53.8
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 2.7e-227 792.7 827 52.8
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 3.5e-227 792.3 812 52.0
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 1.5e-225 786.9 774 55.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 6.8e-223 778.1 788 52.9
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 8.8e-223 777.7 788 53.2
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.2e-222 777.3 776 62.9
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.4e-222 775.4 788 53.4
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 2.7e-219 766.1 770 53.5
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 4.5e-219 765.4 810 52.0
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.7e-218 763.5 793 52.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 1.5e-217 760.4 795 54.8
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.5e-217 760.4 801 51.2
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 7.3e-217 758.1 811 60.7
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 9.5e-217 757.7 768 53.3
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.2e-216 757.3 809 57.7
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 2.6e-214 749.6 794 52.3
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 5.4e-212 741.9 824 54.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 4.6e-211 738.8 871 48.0
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.6e-209 731.9 794 50.0
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 7.3e-209 731.5 813 56.6
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 8.9e-207 724.5 831 49.0
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 1.1e-204 717.6 765 49.9
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 7.3e-201 704.9 771 54.3
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.6e-200 703.7 747 54.5
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 2.1e-200 703.4 773 49.3
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.1e-199 701.0 770 49.2
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.8e-199 700.3 592 59.8
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 7.8e-195 684.9 783 55.8
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 2.3e-194 683.3 828 47.1
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 1.5e-193 680.6 825 47.0
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 9.9e-190 667.9 771 52.7
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 3.5e-187 659.4 587 58.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 3.5e-187 659.4 769 49.8
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 6.6e-186 655.2 852 44.7
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 7.3e-185 651.7 836 45.0
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 1.2e-184 651.0 768 47.8
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 2.1e-184 650.2 818 45.6
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 2.8e-184 649.8 785 46.6
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.5e-182 644.0 771 46.2
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 2.0e-182 643.7 820 44.6
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 3.4e-182 642.9 817 44.3
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 5.8e-182 642.1 798 45.7
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.3e-181 641.0 821 45.1
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 1.3e-181 641.0 823 45.1
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.7e-181 640.6 800 47.9
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 3.8e-181 639.4 778 46.1
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 4.9e-181 639.0 834 44.2
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.4e-180 637.5 778 46.1
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.9e-180 637.1 928 42.2
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 2.4e-180 636.7 766 46.7
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 2.1e-179 633.6 767 46.5
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 4.6e-179 632.5 833 45.0
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.5e-177 627.5 771 46.0
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 5.6e-177 625.5 765 46.3
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.1e-176 623.6 769 46.0
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.8e-176 623.2 819 44.1
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 8.1e-176 621.7 798 45.4
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.2e-174 617.8 813 45.1
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.0e-174 617.1 790 44.7
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 3.8e-173 612.8 747 46.9
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 9.3e-172 608.2 765 44.8
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.2e-171 607.8 593 54.3
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 3.9e-170 602.8 655 50.7
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.5e-169 600.1 830 43.9
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.8e-168 596.7 768 45.7
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.8e-168 596.7 768 45.7
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 4.5e-166 589.3 833 43.5
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 4.6e-163 579.3 719 45.3
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 6.0e-163 578.9 789 49.4
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 5.1e-162 575.9 832 40.6
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 8.7e-162 575.1 780 44.0
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.1e-161 574.7 847 41.4
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 7.4e-161 572.0 807 49.8
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 2.8e-160 570.1 801 41.2
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 4.8e-160 569.3 848 40.7
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 2.4e-159 567.0 794 48.1
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.2e-158 564.7 587 51.4
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.9e-157 560.1 587 49.7
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 6.5e-157 558.9 658 48.3
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 7.1e-156 555.4 547 53.2
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 3.3e-153 546.6 863 40.7
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 4.1e-151 539.7 862 44.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 4.6e-147 526.2 777 40.3
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.3e-146 524.6 868 37.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 3.4e-142 510.0 621 45.2
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 3.8e-141 506.5 634 51.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 3.9e-138 496.5 644 46.4
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 7.4e-129 465.7 543 46.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.1e-119 433.3 798 34.2
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.5e-116 424.9 630 41.6
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 3.5e-110 403.7 499 47.5
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-92 345.5 616 37.5
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.4e-71 275.4 354 43.5
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.0e-69 269.2 339 45.1
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 9.3e-55 219.5 196 55.1
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 1.3e-48 199.1 563 31.1
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.8e-42 178.7 404 32.9
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.4e-39 169.1 159 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 9.3e-39 166.4 469 28.4
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 2.1e-38 165.2 526 27.6
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 7.9e-38 163.3 625 24.8
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 2.5e-36 158.3 600 25.2
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 9.0e-34 149.8 282 33.7
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 2.6e-33 148.3 259 33.2
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 9.7e-28 129.8 148 45.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 9.7e-28 129.8 148 45.3
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 2.2e-27 128.6 108 59.3
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.2e-27 128.6 108 63.0
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.2e-27 128.6 108 63.0
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 2.1e-22 112.1 108 53.7
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 8.2e-19 100.1 109 45.0
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 2.0e-17 95.5 138 38.4
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 1.6e-14 85.9 114 41.2
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 8.0e-14 83.6 93 45.2
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-13 82.8 77 57.1
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 2.0e-09 68.9 77 44.2
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 5.9e-09 67.4 147 30.6
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.5e-07 62.8 78 41.0
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.5e-07 62.0 243 24.3
TWI31G0688 Tripterygium wilfordii HOM05D005706 ORTHO05D007474 5.5e-07 60.8 198 24.7
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.2e-07 60.5 243 23.9
MD16G1061200 Malus domestica HOM05D005706 ORTHO05D007474 1.6e-06 59.3 198 25.3
GSVIVG01012219001 Vitis vinifera HOM05D005706 ORTHO05D007474 1.6e-06 59.3 198 24.2
Zm00001eb151120 Zea mays HOM05D005706 ORTHO05D007474 2.7e-06 58.5 214 22.4
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 3.6e-06 58.2 65 40.0
Lsat_1_v5_gn_9_108561 Lactuca sativa HOM05D018531 ORTHO05D011576 3.6e-06 58.2 54 44.4
Os01g0788900 Oryza sativa ssp. japonica HOM05D005706 ORTHO05D007474 3.6e-06 58.2 142 24.6
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 4.7e-06 57.8 93 38.7
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 6.1e-06 57.4 53 45.3
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 6.1e-06 57.4 144 27.8
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 8.0e-06 57.0 243 23.9
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 8.0e-06 57.0 63 44.4
Lsat_1_v5_gn_5_162860 Lactuca sativa HOM05D001044 ORTHO05D006993 8.0e-06 57.0 53 45.3
Lsat_1_v5_gn_6_70320 Lactuca sativa HOM05D001049 ORTHO05D015148 8.0e-06 57.0 69 42.0
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 8.0e-06 57.0 63 44.4


User provided reference genes

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