Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.6e-288 995.3 487 100.0
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 8.7e-178 627.5 483 63.6
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 3.3e-177 625.5 490 63.3
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.8e-176 621.7 465 66.7
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 6.9e-175 617.8 493 63.1
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 9.3e-172 607.4 473 62.4
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 3.9e-170 602.1 477 61.2
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.1e-169 600.5 477 61.0
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 3.3e-169 599.0 487 58.7
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 8.2e-168 594.3 477 61.4
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.8e-167 593.2 477 60.2
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 1.0e-165 587.4 476 62.0
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 9.3e-164 580.9 466 61.4
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 2.7e-163 579.3 487 58.3
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 7.9e-163 577.8 477 59.7
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 9.1e-159 564.3 482 56.0
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 1.5e-158 563.5 517 55.1
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.3e-157 560.5 476 60.7
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 1.3e-157 560.5 482 56.2
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 2.2e-157 559.7 477 57.9
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 6.5e-157 558.1 486 56.8
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 6.5e-157 558.1 491 58.2
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.4e-156 557.0 477 57.7
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 4.2e-156 555.4 475 57.9
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 2.7e-155 552.7 481 57.6
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 3.6e-155 552.4 487 56.3
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 5.1e-154 548.5 485 55.7
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.5e-153 547.0 474 57.2
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.4e-153 545.4 474 57.0
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 9.7e-153 544.3 521 55.5
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 2.8e-152 542.7 476 56.7
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 3.7e-152 542.3 477 57.2
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 8.2e-152 541.2 479 56.2
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 6.9e-151 538.1 497 55.9
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 9.1e-151 537.7 477 56.6
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.2e-150 537.3 483 56.1
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 1.3e-149 533.9 480 56.2
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 5.0e-149 531.9 483 54.9
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 2.5e-148 529.6 386 66.3
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 3.2e-148 529.3 490 55.7
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.6e-147 526.9 487 53.6
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 2.6e-145 519.6 478 54.4
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 5.7e-145 518.5 492 53.9
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.3e-144 517.3 483 54.0
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 2.8e-144 516.2 532 51.7
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 8.2e-144 514.6 492 55.5
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 7.0e-143 511.5 488 54.7
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 2.9e-141 506.1 492 53.5
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 6.5e-141 505.0 527 49.5
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 7.2e-140 501.5 493 52.1
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.3e-138 496.5 405 59.5
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 3.0e-138 496.1 483 54.5
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 9.7e-137 491.1 521 52.0
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 9.7e-137 491.1 395 63.0
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 1.8e-135 486.9 536 48.7
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 3.8e-133 479.2 480 51.9
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 2.6e-129 466.5 488 49.2
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.4e-129 466.1 488 49.8
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 5.7e-129 465.3 475 50.5
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 3.7e-128 462.6 479 50.5
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 6.3e-128 461.8 588 44.4
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 1.1e-127 461.1 477 49.5
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 4.1e-127 459.1 476 50.8
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 5.4e-127 458.8 479 49.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.2e-126 457.6 480 49.8
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 2.7e-126 456.4 477 49.1
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 5.9e-126 455.3 485 48.9
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 7.7e-126 454.9 488 49.0
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.2e-125 453.4 478 49.0
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 3.8e-125 452.6 483 46.6
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 2.1e-123 446.8 395 57.5
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 4.7e-123 445.7 511 46.8
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 4.7e-123 445.7 517 46.4
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 8.0e-123 444.9 488 50.2
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 8.0e-123 444.9 480 48.3
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.2e-121 441.0 499 47.7
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 3.1e-119 433.0 510 48.4
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 4.7e-115 419.1 333 58.9
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 6.1e-115 418.7 458 48.0
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 5.2e-114 415.6 380 55.0
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.7e-112 410.6 441 50.3
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 4.6e-110 402.5 466 48.3
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 7.8e-110 401.7 466 48.5
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 8.6e-109 398.3 494 44.9
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 2.8e-107 393.3 477 44.9
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 4.0e-106 389.4 323 59.4
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 8.9e-106 388.3 297 65.0
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 9.2e-103 378.3 344 53.5
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.7e-101 374.0 290 62.8
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 5.0e-101 372.5 462 44.4
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.7e-96 357.5 271 62.4
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 6.4e-96 355.5 482 40.5
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 4.7e-91 339.3 272 58.1
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 2.7e-86 323.6 296 56.8
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 9.9e-81 305.1 491 34.8
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 4.2e-79 299.7 290 49.7
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 3.1e-74 283.5 215 63.7
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 7.6e-73 278.9 192 69.8
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 1.1e-71 275.0 335 44.8
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.6e-70 271.2 527 33.8
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.8e-59 233.8 189 61.4
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 4.5e-57 226.5 228 54.4
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.9e-56 223.8 164 62.2
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 9.3e-55 218.8 186 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 5.3e-50 203.0 493 29.6
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 5.9e-49 199.5 163 60.1
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 1.0e-48 198.7 162 61.7
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.5e-39 167.5 142 59.9
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-38 163.7 372 31.5
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 5.9e-33 146.4 142 55.6
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.0e-32 145.6 200 41.0
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 4.4e-20 103.6 81 63.0
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 7.5e-20 102.8 91 51.6
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.6e-17 95.1 80 56.2
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 4.5e-17 93.6 292 29.1
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 6.5e-16 89.7 148 36.5
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.5e-15 87.8 53 71.7
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 1.1e-07 62.4 52 61.5
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 2.5e-07 61.2 87 41.4
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 2.1e-06 58.2 58 46.6


User provided reference genes

Program Settings