Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 0.0e+00 1196.0 588 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 7.5e-301 1036.6 591 85.6
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 4.6e-298 1027.3 588 84.7
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 3.0e-297 1024.6 588 84.4
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 3.9e-297 1024.2 584 85.1
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 3.9e-297 1024.2 595 84.9
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 5.0e-297 1023.8 588 84.5
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.9e-296 1021.9 591 83.9
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 3.3e-296 1021.1 587 84.2
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 5.6e-296 1020.4 593 84.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.8e-295 1018.1 587 83.5
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 3.6e-295 1017.7 582 84.7
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 6.2e-295 1016.9 597 83.1
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 2.3e-294 1015.0 591 83.6
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 8.9e-294 1013.1 594 84.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 5.8e-293 1010.4 591 82.9
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 1.3e-292 1009.2 587 83.3
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.2e-292 1008.4 591 82.7
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 6.4e-292 1006.9 582 83.3
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.4e-291 1005.0 591 82.6
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 7.0e-291 1003.4 591 82.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.2e-291 1003.0 588 83.3
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.1e-290 1001.9 584 84.1
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.7e-290 1001.5 586 82.1
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.5e-290 1001.1 584 82.2
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.5e-290 1001.1 587 83.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 4.6e-290 1000.7 611 80.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 7.8e-290 1000.0 545 88.6
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 3.9e-289 997.7 586 82.1
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 3.9e-289 997.7 591 82.4
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 3.9e-289 997.7 600 81.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.6e-289 996.9 591 82.1
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 8.6e-289 996.5 586 82.9
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.6e-289 996.5 591 82.2
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.1e-288 996.1 587 81.9
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.1e-288 996.1 586 82.1
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.1e-288 996.1 579 82.4
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.9e-288 995.3 591 81.9
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.3e-288 994.6 587 82.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.3e-288 994.6 581 81.6
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 4.3e-288 994.2 592 81.8
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 7.3e-288 993.4 584 82.5
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.2e-287 992.6 585 81.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-287 992.6 587 81.9
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.6e-287 992.3 641 76.6
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.6e-287 992.3 588 81.8
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 6.2e-287 990.3 582 82.6
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 6.2e-287 990.3 582 82.3
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.4e-286 989.2 587 81.6
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.1e-286 988.0 587 82.1
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 4.0e-286 987.6 588 81.8
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.8e-286 986.9 581 81.2
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 7.5e-285 983.4 588 81.5
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.3e-284 982.6 584 81.3
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.3e-284 982.6 581 81.1
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.7e-284 982.2 588 80.4
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 2.9e-284 981.5 587 80.2
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.9e-284 981.5 593 80.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 6.4e-284 980.3 593 80.3
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 6.4e-284 980.3 588 81.8
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.1e-283 979.5 591 80.5
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.9e-283 978.8 588 80.4
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.9e-283 978.8 579 82.2
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 9.2e-283 976.5 589 80.0
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.2e-282 976.1 582 80.2
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.6e-282 975.7 584 80.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.3e-281 972.6 589 79.6
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.7e-281 972.2 578 80.3
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.3e-281 971.8 554 83.4
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.3e-281 971.8 588 81.5
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 6.6e-281 970.3 528 88.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.5e-280 969.1 546 83.9
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 4.3e-280 967.6 586 79.7
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 7.3e-280 966.8 560 82.3
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 3.6e-279 964.5 586 79.5
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.7e-279 964.1 576 81.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 8.1e-279 963.4 579 80.1
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.4e-278 962.6 585 79.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 6.8e-278 960.3 582 78.2
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 8.9e-278 959.9 582 78.2
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.5e-277 959.1 579 78.2
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.4e-277 958.0 585 78.8
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 5.8e-277 957.2 582 77.3
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 9.9e-277 956.4 579 78.2
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.3e-276 956.1 547 83.0
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.3e-276 956.1 595 78.0
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 2.2e-276 955.3 582 77.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.2e-276 955.3 586 78.3
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-275 952.6 589 77.8
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.7e-274 948.3 553 80.7
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.7e-274 948.3 687 70.9
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 3.5e-274 948.0 579 77.4
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 6.0e-274 947.2 559 83.0
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.0e-273 946.4 588 78.2
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.3e-273 946.0 543 82.7
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 6.6e-273 943.7 580 77.6
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-272 943.0 580 77.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-272 943.0 580 77.4
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 3.3e-272 941.4 588 76.9
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.6e-271 939.1 584 78.1
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 2.8e-271 938.3 531 83.4
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 3.1e-270 934.9 558 80.3
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 8.7e-265 916.8 558 79.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 9.6e-264 913.3 577 77.5
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.1e-263 912.1 591 74.6
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.5e-261 906.0 590 74.2
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 4.5e-261 904.4 590 74.1
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 3.8e-260 901.4 532 80.5
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-259 899.8 550 77.6
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.3e-249 865.5 584 73.8
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.7e-249 864.0 547 76.2
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.9e-248 862.4 581 74.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.3e-247 859.8 588 70.9
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 2.1e-247 859.0 503 82.3
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.8e-239 831.2 547 75.5
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 5.9e-237 824.3 448 88.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.7e-237 823.9 448 87.7
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.8e-233 812.8 547 70.6
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.8e-231 804.7 439 87.7
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.4e-230 802.4 549 70.7
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.4e-230 802.4 558 72.8
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.5e-227 792.3 589 65.0
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 4.7e-210 734.9 517 70.6
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.8e-199 698.4 488 71.3
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 8.3e-191 671.0 451 72.7
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.7e-183 646.7 534 60.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.5e-179 633.6 361 83.1
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 2.6e-168 596.3 344 83.1
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.6e-164 581.6 558 57.0
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.1e-150 537.7 345 77.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.1e-146 523.5 559 53.7
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 4.0e-145 519.2 417 65.7
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.7e-143 513.8 278 88.8
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 2.4e-142 510.0 280 85.7
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.5e-139 500.0 561 48.0
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 1.2e-133 481.1 267 85.8
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.4e-113 413.7 574 43.6
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.0e-108 398.3 288 66.0
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.5e-94 351.3 645 35.8
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 6.3e-90 335.9 263 66.9
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.4e-89 334.7 184 84.8
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 6.5e-87 325.9 179 88.3
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.3e-84 317.4 179 84.9
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.8e-81 307.8 188 75.5
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 5.4e-81 306.2 593 36.4
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 6.6e-79 299.3 167 85.6
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.5e-78 298.1 499 37.7
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.3e-74 285.0 601 33.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.1e-69 267.7 321 48.6
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.4e-67 260.4 140 87.1
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 5.4e-65 253.1 609 32.3
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 3.4e-59 233.8 159 69.2
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.3e-58 231.9 599 30.4
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.1e-53 212.6 117 86.3
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 3.2e-49 200.7 123 82.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 4.7e-45 186.8 100 88.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 2.2e-42 177.9 107 77.6
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.0e-39 169.1 157 56.1
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.3e-38 163.7 126 65.9
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.4e-30 136.3 117 61.5
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 8.1e-29 132.9 67 88.1
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 6.9e-28 129.8 77 76.6
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-27 128.6 137 51.8
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-27 128.6 109 63.3
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.0e-27 128.3 63 95.2
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-18 98.6 64 75.0
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.4e-12 78.2 54 72.2
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 1.2e-11 75.9 78 56.4
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 5.9e-11 73.6 78 55.1
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.6e-08 65.5 73 50.7
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 3.5e-08 64.3 64 48.4
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 3.0e-07 61.2 38 71.1


User provided reference genes

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