Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1257.3 635 100.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 633 92.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 633 91.5
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 635 91.5
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 632 91.1
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 635 91.3
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 633 90.7
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 633 90.8
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 632 91.3
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 632 90.5
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 633 90.7
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 635 90.7
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 633 90.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 633 90.5
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 631 90.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 633 90.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 633 90.7
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 633 90.5
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 633 91.2
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 633 90.2
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 635 89.9
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 633 89.9
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 633 90.7
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 633 90.2
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 632 89.7
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 633 90.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 633 90.2
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 635 90.1
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 633 90.0
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 633 89.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 633 89.9
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 633 90.2
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 633 89.6
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 633 89.9
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 643 88.6
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 635 89.4
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 629 90.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 633 89.3
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 635 89.3
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 635 89.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 629 89.8
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 633 89.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 633 89.4
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 635 89.0
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 633 89.3
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 635 89.0
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 633 89.7
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 631 88.6
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 633 89.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 631 89.2
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 633 88.2
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 627 89.8
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 632 88.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 630 88.4
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 633 89.6
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 630 89.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 635 87.4
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 631 88.4
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 633 89.4
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 627 89.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 635 87.1
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 631 88.4
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 633 88.8
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 632 87.7
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 633 88.5
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 633 89.1
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 632 87.7
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 630 87.6
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 633 87.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 630 87.9
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 630 87.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 630 87.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 660 84.7
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 632 88.6
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 630 87.3
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 630 87.3
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 630 87.3
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 630 87.3
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 632 88.8
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 630 87.0
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 635 86.1
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 630 87.0
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 635 87.6
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 633 87.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 628 88.7
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 632 86.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 630 87.5
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1112.4 632 86.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 635 85.4
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 635 85.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 632 85.9
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 632 85.6
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1107.0 633 86.4
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 632 85.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1105.9 630 86.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 631 86.5
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1081.6 643 84.9
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1081.2 635 83.6
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.5e-310 1068.9 628 82.8
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 4.7e-309 1063.9 628 82.6
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 6.4e-306 1053.5 628 81.7
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 8.4e-306 1053.1 582 88.8
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.7e-298 1028.9 631 79.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 4.0e-292 1007.7 635 78.4
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 6.2e-285 983.8 537 90.9
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 3.1e-284 981.5 534 90.6
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.7e-280 968.4 534 88.2
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.4e-275 951.4 649 74.9
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 4.1e-268 927.9 629 73.4
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 4.6e-264 914.4 631 73.7
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 3.7e-261 904.8 644 71.6
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 6.3e-261 904.0 495 90.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.6e-248 862.8 635 72.1
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 8.8e-247 857.1 503 85.7
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.5e-241 839.0 503 83.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 2.7e-240 835.5 633 70.8
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.2e-235 820.1 638 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.0e-234 817.0 499 81.0
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.3e-226 790.0 638 62.1
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.2e-205 719.5 444 81.8
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.6e-193 677.6 533 67.7
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.0e-182 643.3 641 53.4
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.9e-180 636.7 446 74.4
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.1e-177 627.5 354 87.9
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.6e-166 588.2 407 74.2
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 3.7e-160 569.3 311 91.3
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 7.7e-150 535.0 291 90.0
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.4e-138 497.7 271 90.4
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 6.1e-115 419.1 527 43.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 6.8e-98 362.5 197 90.9
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.2e-87 327.0 236 69.5
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.3e-84 317.0 231 71.4
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.3e-84 316.6 181 86.2
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 6.0e-78 296.2 163 88.3
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 4.7e-75 286.6 163 85.9
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.2e-72 277.7 633 33.6
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.2e-57 228.8 270 49.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 3.9e-53 213.8 230 55.7
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 3.0e-45 187.6 101 91.1
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.9e-41 173.3 101 83.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.6e-38 165.2 103 76.7
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.1e-38 164.9 157 61.1
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 3.6e-38 164.1 99 81.8
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 5.1e-37 160.2 127 66.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 6.7e-37 159.8 86 86.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 7.4e-36 156.4 90 84.4
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.6e-33 147.9 91 81.3
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.9e-32 144.4 172 51.2
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.4e-31 142.1 74 86.5
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.6e-20 104.8 53 94.3
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 9.7e-20 102.8 116 50.0
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 4.8e-19 100.5 72 68.1
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 5.3e-18 97.1 58 82.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.5e-17 94.4 51 84.3
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.7e-17 93.2 63 68.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 7.2e-15 86.7 49 79.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.0e-13 81.3 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.7e-09 68.2 43 74.4


User provided reference genes

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