Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.2e-149 533.1 263 100.0
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 1.5e-91 340.1 264 67.4
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 6.3e-90 334.7 275 65.8
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 8.2e-90 334.3 266 66.9
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.8e-89 333.2 270 67.0
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 2.4e-89 332.8 263 67.3
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 2.4e-89 332.8 265 67.5
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 2.4e-89 332.8 269 67.3
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 5.3e-89 331.6 263 67.3
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 1.6e-88 330.1 269 66.5
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 5.9e-88 328.2 243 71.6
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 5.9e-88 328.2 269 66.2
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 7.7e-88 327.8 254 68.1
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 7.7e-88 327.8 267 68.5
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 5.0e-87 325.1 266 65.8
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 6.5e-87 324.7 237 69.2
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.2e-86 321.2 182 84.1
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 1.4e-84 317.0 264 63.3
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 2.3e-84 316.2 264 65.2
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 6.7e-84 314.7 246 66.7
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 2.0e-83 313.2 227 68.7
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.0e-83 313.2 274 63.9
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 4.4e-83 312.0 252 64.3
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.2e-82 309.7 272 63.6
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 2.8e-82 309.3 273 62.3
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 2.8e-82 309.3 241 66.8
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.7e-82 308.9 282 62.1
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 6.3e-82 308.1 241 67.2
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 6.3e-82 308.1 274 63.5
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 6.3e-82 308.1 265 64.9
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 8.2e-82 307.8 272 63.2
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 1.4e-81 307.0 264 59.1
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.4e-81 307.0 191 78.5
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.8e-81 306.6 228 70.6
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.8e-81 306.6 228 70.6
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 2.4e-81 306.2 236 66.9
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 5.3e-81 305.1 224 70.5
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 9.1e-81 304.3 236 69.1
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 1.2e-80 303.9 241 65.1
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.2e-80 303.9 193 75.1
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 1.2e-80 303.9 237 67.9
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.2e-80 303.9 228 71.1
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.6e-80 303.5 261 62.5
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 1.6e-80 303.5 231 67.1
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 2.0e-80 303.1 232 67.2
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 2.7e-80 302.8 245 68.2
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 2.7e-80 302.8 243 65.0
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 3.5e-80 302.4 261 61.3
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 4.5e-80 302.0 271 60.5
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 5.9e-80 301.6 274 62.4
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 7.7e-80 301.2 262 61.8
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 7.7e-80 301.2 262 61.8
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 7.7e-80 301.2 186 79.6
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 1.0e-79 300.8 192 76.0
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 1.3e-79 300.4 235 68.5
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 1.3e-79 300.4 270 61.9
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 1.3e-79 300.4 262 62.6
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.7e-79 300.1 186 78.0
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 2.2e-79 299.7 245 67.3
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.2e-79 299.7 250 62.4
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 2.2e-79 299.7 186 78.0
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 3.8e-79 298.9 191 75.4
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 5.0e-79 298.5 189 76.2
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 5.0e-79 298.5 189 76.2
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 8.5e-79 297.7 246 64.6
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 2.5e-78 296.2 258 62.4
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 3.2e-78 295.8 258 60.5
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 3.2e-78 295.8 265 61.1
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 4.2e-78 295.4 230 67.4
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 5.5e-78 295.0 188 74.5
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 7.2e-78 294.7 187 75.4
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 7.2e-78 294.7 268 61.2
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 9.4e-78 294.3 185 75.1
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 9.4e-78 294.3 185 75.1
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 9.4e-78 294.3 185 75.1
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.2e-77 293.9 240 64.2
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 1.2e-77 293.9 271 61.3
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.6e-77 293.5 257 60.7
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 2.1e-77 293.1 191 73.8
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 2.1e-77 293.1 190 76.3
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 3.6e-77 292.4 270 60.7
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 3.6e-77 292.4 254 62.2
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 4.7e-77 292.0 257 60.7
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 1.8e-76 290.0 270 60.4
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 8.8e-76 287.7 177 78.5
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 8.8e-76 287.7 229 68.1
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 1.2e-75 287.3 265 58.1
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 3.4e-75 285.8 290 55.9
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 7.5e-75 284.6 289 57.1
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 7.5e-75 284.6 254 60.6
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 7.5e-75 284.6 249 59.0
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 1.3e-74 283.9 193 71.5
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 6.3e-74 281.6 191 71.7
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 8.3e-74 281.2 173 79.8
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 1.1e-73 280.8 264 60.2
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 5.9e-72 275.0 297 54.2
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 5.0e-71 271.9 188 70.7
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 8.6e-71 271.2 249 57.4
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 8.6e-71 271.2 247 60.7
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.1e-70 270.8 180 73.9
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.6e-67 259.6 138 87.7
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 2.4e-65 253.1 179 72.1
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 2.0e-64 250.0 229 59.0
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 8.6e-63 244.6 229 58.5
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 2.3e-55 219.9 131 80.2
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 2.9e-50 203.0 145 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.9e-46 190.3 221 48.9
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.9e-46 190.3 196 51.5
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.4e-44 184.1 103 86.4
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 5.8e-43 178.7 137 69.3
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 9.9e-43 177.9 200 49.0
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 8.1e-37 158.3 180 46.7
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 3.1e-36 156.4 156 51.3
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.9e-34 149.8 105 74.3
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.2e-32 144.4 103 73.8
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 5.6e-30 135.6 182 45.1
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.8e-28 130.6 69 87.0
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 6.0e-24 115.5 140 52.9
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 2.3e-23 113.6 61 83.6
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 4.5e-19 99.4 81 67.9
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 2.9e-18 96.7 60 76.7
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 1.2e-16 91.3 184 36.4
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 1.3e-15 87.8 112 50.9
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.8e-12 77.4 121 44.6
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 3.1e-12 76.6 129 45.7
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 1.5e-11 74.3 60 65.0
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 1.1e-09 68.2 61 55.7
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 1.9e-09 67.4 122 37.7
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 5.5e-09 65.9 45 71.1
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 2.5e-06 57.0 65 44.6


User provided reference genes

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