Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35830 Coffea canephora HOM05D002990 ORTHO05D025120 7.2e-98 360.5 176 100.0
Cc00_g30140 Coffea canephora HOM05D002990 ORTHO05D025120 2.1e-65 252.7 135 94.8
Cc08_g04530 Coffea canephora HOM05D002990 ORTHO05D025120 8.3e-54 214.2 136 83.1
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 7.8e-20 101.3 175 42.3
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 5.6e-18 95.1 52 86.5
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 2.8e-17 92.8 52 84.6
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 1.1e-16 90.9 52 80.8
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 1.1e-16 90.9 52 82.7
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.1e-16 90.9 52 82.7
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 1.4e-16 90.5 126 45.2
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 1.4e-16 90.5 52 82.7
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 1.4e-16 90.5 52 82.7
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 1.8e-16 90.1 52 80.8
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 1.8e-16 90.1 52 80.8
CSS0049984 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 3.1e-16 89.4 52 78.8
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 3.1e-16 89.4 52 82.7
Lj9C298T10 Lonicera japonica HOM05D002990 ORTHO05D003954 4.0e-16 89.0 52 82.7
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 4.0e-16 89.0 126 45.2
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 4.0e-16 89.0 52 80.8
PGR065G0001 Punica granatum HOM05D002990 ORTHO05D003954 4.0e-16 89.0 52 80.8
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 5.3e-16 88.6 52 80.8
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 5.3e-16 88.6 52 80.8
PSO210G5298 Papaver somniferum HOM05D002990 ORTHO05D003954 5.3e-16 88.6 126 46.0
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 6.9e-16 88.2 52 80.8
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 6.9e-16 88.2 52 80.8
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 6.9e-16 88.2 52 80.8
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 6.9e-16 88.2 52 80.8
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 6.9e-16 88.2 52 82.7
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 9.0e-16 87.8 52 78.8
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 1.2e-15 87.4 52 78.8
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 1.2e-15 87.4 52 78.8
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 1.5e-15 87.0 52 82.7
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 2.0e-15 86.7 52 78.8
Lj5C267G4 Lonicera japonica HOM05D002990 ORTHO05D003954 2.0e-15 86.7 175 38.9
PSO832G0554 Papaver somniferum HOM05D002990 ORTHO05D003954 2.0e-15 86.7 126 45.2
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 78.8
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 78.8
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 80.8
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 80.8
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 80.8
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 80.8
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 2.6e-15 86.3 54 77.8
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 78.8
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 80.8
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 2.6e-15 86.3 52 80.8
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 3.4e-15 85.9 52 76.9
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 3.4e-15 85.9 51 82.4
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 3.4e-15 85.9 51 82.4
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 3.4e-15 85.9 175 38.3
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 3.4e-15 85.9 51 78.4
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 4.5e-15 85.5 52 78.8
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 4.5e-15 85.5 52 76.9
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.5e-15 85.5 54 77.8
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.5e-15 85.5 54 77.8
MBI14_g22163_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 4.5e-15 85.5 52 75.0
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 4.5e-15 85.5 52 75.0
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 5.8e-15 85.1 126 45.2
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 5.8e-15 85.1 52 78.8
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 75.0
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 76.9
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 76.9
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 76.9
Nitab4.5_0000787g0120 Nicotiana tabacum HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 75.0
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 75.0
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 7.6e-15 84.7 52 76.9
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 9.9e-15 84.3 51 74.5
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 9.9e-15 84.3 52 76.9
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 9.9e-15 84.3 52 76.9
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 1.3e-14 84.0 52 73.1
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 1.3e-14 84.0 52 75.0
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 1.3e-14 84.0 52 76.9
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 1.7e-14 83.6 51 74.5
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.7e-14 83.6 52 75.0
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 1.7e-14 83.6 52 76.9
Sc09g0003570 Simmondsia chinensis HOM05D002990 ORTHO05D003954 1.7e-14 83.6 51 72.5
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 1.7e-14 83.6 175 36.6
vmacro19861 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 1.7e-14 83.6 175 37.1
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 1.7e-14 83.6 51 80.4
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 1.7e-14 83.6 51 80.4
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 2.2e-14 83.2 52 76.9
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 2.2e-14 83.2 52 76.9
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 71.2
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 75.0
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 76.9
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 76.9
MBI19_g42889_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 73.1
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 75.0
Thecc.02G008000 Theobroma cacao HOM05D002990 ORTHO05D003954 2.9e-14 82.8 52 71.2
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 75.0
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 75.0
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 76.9
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 71.2
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 71.2
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 73.1
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 3.8e-14 82.4 52 75.0
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 6.4e-14 81.6 52 73.1
SEGI_30717 Sequoiadendron giganteum HOM05D002990 ORTHO05D003954 6.4e-14 81.6 52 71.2
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 8.4e-14 81.3 51 74.5
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 8.4e-14 81.3 126 43.7
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 8.4e-14 81.3 52 75.0
Potri.015G125400 Populus trichocarpa HOM05D002990 ORTHO05D003954 8.4e-14 81.3 52 73.1
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 8.4e-14 81.3 52 75.0
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 1.1e-13 80.9 175 36.0
Cpa.g.sc30.147 Carica papaya HOM05D002990 ORTHO05D003954 1.1e-13 80.9 51 74.5
Peaxi162Scf00011g01423 Petunia axillaris HOM05D002990 ORTHO05D003954 1.1e-13 80.9 52 73.1
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 1.4e-13 80.5 52 69.2
Ah.06g187310 Amaranthus hybridus HOM05D002990 ORTHO05D003954 1.9e-13 80.1 51 72.5
Haze_16449 Corylus avellana HOM05D002990 ORTHO05D003954 1.9e-13 80.1 52 71.2
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 1.9e-13 80.1 52 75.0
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 1.9e-13 80.1 52 75.0
TAR625G1487 Trochodendron aralioides HOM05D002990 ORTHO05D003954 1.9e-13 80.1 50 72.0
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 2.4e-13 79.7 52 71.2
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 2.4e-13 79.7 52 69.2
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 2.4e-13 79.7 52 71.2
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 2.4e-13 79.7 52 71.2
Rhsim05G0202100 Rhododendron simsii HOM05D002990 ORTHO05D025120 2.4e-13 79.7 49 77.6
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 71.2
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 71.2
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 71.2
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 71.2
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 73.1
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 75.0
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 71.2
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 3.2e-13 79.3 52 67.3
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 4.2e-13 79.0 173 35.3
Haze_04601 Corylus avellana HOM05D002990 ORTHO05D003954 4.2e-13 79.0 52 69.2
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 4.2e-13 79.0 56 69.6
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 4.2e-13 79.0 51 72.5
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 4.2e-13 79.0 51 72.5
Sabra12G0094700 Salix brachista HOM05D002990 ORTHO05D003954 4.2e-13 79.0 62 66.1
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 4.2e-13 79.0 52 71.2
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 5.4e-13 78.6 53 71.7
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 5.4e-13 78.6 51 72.5
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 5.4e-13 78.6 52 71.2
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 7.1e-13 78.2 52 73.1
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 7.1e-13 78.2 52 71.2
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 7.1e-13 78.2 52 65.4
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 1.2e-12 77.4 52 71.2
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 1.2e-12 77.4 52 69.2
MBI15_g43444_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.6e-12 77.0 64 62.5
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 2.1e-12 76.6 173 35.8
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 2.1e-12 76.6 52 67.3
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 2.1e-12 76.6 175 35.4
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 2.7e-12 76.3 187 32.6
Carub.0006s0395 Capsella rubella HOM05D002990 ORTHO05D003954 3.5e-12 75.9 54 68.5
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 4.6e-12 75.5 51 64.7
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 7.9e-12 74.7 172 34.3
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 1.3e-11 73.9 52 71.2
CARHR277810 Cardamine hirsuta HOM05D002990 ORTHO05D003954 2.3e-11 73.2 55 65.5
BcaB05g21739 Brassica carinata HOM05D002990 ORTHO05D003954 3.0e-11 72.8 55 65.5
Os01g0833700 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.0e-11 72.8 51 68.6
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 3.9e-11 72.4 52 65.4
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 3.9e-11 72.4 175 34.3
AT5G05010 Arabidopsis thaliana HOM05D002990 ORTHO05D003954 5.1e-11 72.0 54 64.8
Aa31LG11G5670 Aethionema arabicum HOM05D002990 ORTHO05D003954 6.7e-11 71.6 54 66.7
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 1.1e-10 70.9 51 64.7
Thhalv10013243m.g Eutrema salsugineum HOM05D002990 ORTHO05D003954 1.5e-10 70.5 54 63.0
BcaC06g32216 Brassica carinata HOM05D002990 ORTHO05D003954 1.9e-10 70.1 54 63.0
BolC9t59926H Brassica oleracea HOM05D002990 ORTHO05D003954 1.9e-10 70.1 54 63.0
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 3.3e-10 69.3 55 63.6
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 3.3e-10 69.3 55 61.8
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 3.3e-10 69.3 55 63.6
CARHR208250 Cardamine hirsuta HOM05D002990 ORTHO05D003954 3.3e-10 69.3 54 63.0
Sp6g37790 Schrenkiella parvula HOM05D002990 ORTHO05D003954 3.3e-10 69.3 54 63.0
AL6G14720 Arabidopsis lyrata HOM05D002990 ORTHO05D003954 7.4e-10 68.2 177 33.9
BcaC03g13141 Brassica carinata HOM05D002990 ORTHO05D003954 7.4e-10 68.2 165 33.9
C02p02130 Brassica napus HOM05D002990 ORTHO05D003954 7.4e-10 68.2 165 33.9
BolC2t06181H Brassica oleracea HOM05D002990 ORTHO05D003954 7.4e-10 68.2 165 33.9
Pp3c20_16550 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.3e-09 67.4 52 61.5
CDE04G3634 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.1e-09 66.6 40 77.5
Pp3c23_8750 Physcomitrium patens HOM05D002990 ORTHO05D003954 2.1e-09 66.6 52 59.6
Pp3c24_4890 Physcomitrium patens HOM05D002990 ORTHO05D003954 3.7e-09 65.9 52 59.6
Mapoly0022s0045 Marchantia polymorpha HOM05D002990 ORTHO05D003954 4.8e-09 65.5 52 55.8
Pp3c8_9870 Physcomitrium patens HOM05D002990 ORTHO05D003954 6.2e-09 65.1 52 57.7
ATR1132G100 Amborella trichopoda HOM05D002990 ORTHO05D003954 1.1e-08 64.3 51 54.9
BraA02t04830Z Brassica rapa HOM05D002990 ORTHO05D003954 1.1e-08 64.3 175 32.6
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 1.4e-08 63.9 170 32.4
SMO134G0021 Selaginella moellendorffii HOM05D002990 ORTHO05D003954 5.3e-08 62.0 52 53.8
ATR0824G151 Amborella trichopoda HOM05D002990 ORTHO05D003954 2.6e-07 59.7 51 54.9
Os08g0367625 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D025120 5.8e-07 58.5 49 63.3
BcaC08g47628 Brassica carinata HOM05D002990 ORTHO05D024332 7.6e-07 58.2 42 64.3
C06p51810 Brassica napus HOM05D002990 ORTHO05D024332 9.9e-07 57.8 42 61.9
BraA10t45158Z Brassica rapa HOM05D002990 ORTHO05D003954 1.7e-06 57.0 77 44.2
AUR62011579 Chenopodium quinoa HOM05D002990 ORTHO05D003954 6.4e-06 55.1 35 74.3


User provided reference genes

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