Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 1.4e-187 659.4 339 100.0
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 4.3e-184 647.9 339 98.5
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 5.5e-163 577.8 300 98.7
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 3.2e-126 455.7 299 78.6
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 5.0e-124 448.4 299 76.9
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 2.6e-120 436.0 300 75.3
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 1.3e-119 433.7 297 75.4
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 8.3e-119 431.0 299 73.9
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 8.3e-119 431.0 321 70.1
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 3.2e-118 429.1 299 72.9
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 4.1e-118 428.7 299 73.9
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 4.1e-118 428.7 299 73.9
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 9.2e-118 427.6 299 72.2
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.1e-117 426.4 297 73.4
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 2.1e-117 426.4 296 75.3
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 1.0e-116 424.1 301 71.8
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 1.0e-116 424.1 299 73.9
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 1.7e-116 423.3 299 72.9
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 2.3e-116 422.9 299 72.6
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 5.0e-116 421.8 297 72.7
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 3.3e-115 419.1 299 71.2
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 5.6e-115 418.3 302 70.9
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 5.6e-115 418.3 295 70.8
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 5.6e-115 418.3 299 72.2
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 5.6e-115 418.3 300 72.0
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 5.6e-115 418.3 299 73.2
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 7.3e-115 417.9 299 72.6
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 9.5e-115 417.5 299 70.6
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 9.5e-115 417.5 299 73.2
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 1.2e-114 417.2 299 71.6
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 2.1e-114 416.4 297 72.4
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 6.2e-114 414.8 297 72.7
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 1.4e-113 413.7 321 67.0
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 4.0e-113 412.1 299 68.9
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 5.2e-113 411.8 299 69.6
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 1.2e-112 410.6 299 72.2
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.2e-112 410.6 299 70.9
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 3.4e-112 409.1 298 70.5
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 7.5e-112 407.9 297 69.4
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 7.5e-112 407.9 297 69.0
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 7.5e-112 407.9 299 70.9
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 9.9e-112 407.5 297 69.7
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 1.3e-111 407.1 299 68.9
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 2.2e-111 406.4 301 70.1
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 2.9e-111 406.0 299 68.9
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.9e-111 406.0 299 67.6
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 2.9e-111 406.0 318 67.9
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 8.3e-111 404.4 297 72.7
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 1.1e-110 404.1 301 70.1
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.9e-110 403.3 311 65.9
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 3.2e-110 402.5 269 75.8
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 7.1e-110 401.4 297 68.7
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 9.2e-110 401.0 299 68.6
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 2.1e-109 399.8 299 68.2
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 6.0e-109 398.3 299 67.2
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 6.0e-109 398.3 301 69.1
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 7.8e-109 397.9 301 68.8
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 7.8e-109 397.9 301 68.8
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 1.0e-108 397.5 300 68.0
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.7e-108 396.7 296 69.3
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 1.7e-108 396.7 304 69.4
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 3.0e-108 396.0 299 67.6
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 6.6e-108 394.8 301 68.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 6.6e-108 394.8 301 68.4
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 8.6e-108 394.4 296 69.6
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.6e-108 394.4 299 67.6
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 1.5e-107 393.7 301 68.4
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.5e-107 393.7 301 68.8
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 2.5e-107 392.9 297 69.4
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 2.5e-107 392.9 299 67.9
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 3.3e-107 392.5 299 67.9
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 4.3e-107 392.1 297 67.7
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 7.3e-107 391.3 299 66.9
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 7.3e-107 391.3 297 68.7
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 1.6e-106 390.2 299 67.6
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 3.6e-106 389.0 299 66.2
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 4.7e-106 388.7 326 64.4
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 8.1e-106 387.9 299 65.9
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 8.1e-106 387.9 299 66.2
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.1e-105 387.5 299 67.9
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 4.0e-105 385.6 299 66.9
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.2e-104 384.0 299 65.6
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 2.6e-104 382.9 299 64.5
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 7.6e-104 381.3 303 66.7
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.3e-103 380.6 297 68.4
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 4.9e-103 378.6 349 60.2
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 1.1e-102 377.5 263 73.4
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.4e-102 377.1 301 65.8
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 3.5e-101 372.5 301 65.4
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 1.0e-100 370.9 299 64.2
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 3.3e-99 365.9 301 64.5
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.7e-95 353.6 297 63.3
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 5.4e-94 348.6 312 63.8
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 4.6e-93 345.5 570 40.9
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 6.0e-93 345.1 263 69.2
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 6.0e-93 345.1 312 59.6
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 1.3e-92 344.0 306 63.7
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 1.3e-92 344.0 306 63.7
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 6.6e-92 341.7 263 68.4
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 5.6e-91 338.6 299 61.9
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 9.6e-91 337.8 297 60.6
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.4e-89 334.0 297 59.9
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 5.8e-88 328.6 299 59.2
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 8.4e-87 324.7 298 59.1
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 2.7e-85 319.7 297 59.6
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 1.3e-84 317.4 299 57.9
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.1e-84 315.5 297 56.9
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 5.1e-84 315.5 299 58.2
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 4.3e-83 312.4 157 100.0
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 6.5e-71 271.9 200 70.5
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 4.2e-70 269.2 298 50.3
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.5e-70 268.9 261 55.6
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 6.9e-65 251.9 285 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 7.9e-61 238.4 280 47.1
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 5.1e-60 235.7 296 50.3
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 9.1e-57 224.9 299 45.8
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 1.4e-52 211.1 253 46.2
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.0e-47 194.9 143 71.3
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.1e-33 148.3 148 54.1
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 1.3e-23 114.8 88 60.2
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 3.6e-21 106.7 90 62.2
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.3e-18 98.2 59 79.7
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.0e-15 88.6 67 64.2
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 5.0e-15 86.3 125 44.8
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 9.8e-11 72.0 55 60.0
MELO3C016650.2 Cucumis melo HOM05D004952 ORTHO05D006131 9.2e-09 65.5 51 66.7


User provided reference genes

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