Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35090 Coffea canephora HOM05D004367 ORTHO05D004937 3.4e-112 408.3 201 100.0
TAR624G0790 Trochodendron aralioides HOM05D004367 ORTHO05D004937 3.0e-47 192.6 175 60.0
MSTRG.15226 Avicennia marina HOM05D004367 ORTHO05D004937 5.0e-47 191.8 180 56.1
Actinidia12812 Actinidia chinensis HOM05D004367 ORTHO05D004937 2.5e-46 189.5 164 62.8
CiPaw.11G168700 Carya illinoinensis HOM05D004367 ORTHO05D004937 4.3e-46 188.7 182 58.8
Dinv20169 Davidia involucrata HOM05D000397 ORTHO05D004937 2.1e-45 186.4 171 63.7
CSS0040030 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.4e-44 183.7 188 57.4
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 2.3e-44 183.0 161 62.1
Sabra16G0262900 Salix brachista HOM05D004367 ORTHO05D004937 4.0e-44 182.2 179 59.8
Solyc10g006990.3 Solanum lycopersicum HOM05D004367 ORTHO05D004937 6.8e-44 181.4 161 61.5
GSVIVG01014349001 Vitis vinifera HOM05D004367 ORTHO05D004937 6.8e-44 181.4 136 69.9
Hma1.2p1_0480F.1_g161810 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 8.9e-44 181.0 123 74.8
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 1.5e-43 180.3 188 56.9
Lj1A844G36 Lonicera japonica HOM05D004367 ORTHO05D004937 3.4e-43 179.1 175 53.7
Sopen10g002900 Solanum pennellii HOM05D004367 ORTHO05D004937 3.4e-43 179.1 158 63.3
Cfa020594 Carpinus fangiana HOM05D004367 ORTHO05D004937 4.4e-43 178.7 194 55.7
Nn1g06556 Nelumbo nucifera HOM05D004367 ORTHO05D004937 4.4e-43 178.7 171 60.2
TWI39G0928 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 5.8e-43 178.3 143 67.1
SalBow8G0254 Salvia bowleyana HOM05D004367 ORTHO05D004937 7.5e-43 177.9 164 60.4
Oeu005412.1 Olea europaea HOM05D004367 ORTHO05D004937 1.3e-42 177.2 136 66.9
Hma1.2p1_0480F.1_g161800 Hydrangea macrophylla HOM05D004367 ORTHO05D004937 2.2e-42 176.4 175 56.6
Duzib213G0391 Durio zibethinus HOM05D004367 ORTHO05D004937 2.4e-41 172.9 152 60.5
Nitab4.5_0000207g0150 Nicotiana tabacum HOM05D004367 ORTHO05D004937 2.4e-41 172.9 120 73.3
Potri.001G400800 Populus trichocarpa HOM05D004367 ORTHO05D004937 1.2e-40 170.6 144 65.3
vmacro11860 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.6e-40 170.2 174 56.3
vmacro22868 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.6e-40 170.2 174 56.3
Cpa.g.sc80.55 Carica papaya HOM05D004367 ORTHO05D004937 2.7e-40 169.5 168 54.2
DCAR_017144 Daucus carota HOM05D004367 ORTHO05D004937 1.3e-39 167.2 168 57.1
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 5.1e-39 165.2 174 54.0
Nitab4.5_0002383g0110 Nicotiana tabacum HOM05D004367 ORTHO05D004937 1.1e-38 164.1 162 57.4
Phvul.005G070800 Phaseolus vulgaris HOM05D004367 ORTHO05D004937 1.1e-38 164.1 135 64.4
Ciclev10008024m.g Citrus clementina HOM05D004367 ORTHO05D004937 2.5e-38 162.9 131 65.6
COL.COLO4_09395 Corchorus olitorius HOM05D004367 ORTHO05D004937 2.5e-38 162.9 174 54.0
Oeu060551.2 Olea europaea HOM05D004367 ORTHO05D004937 2.5e-38 162.9 147 58.5
MD03G1226500 Malus domestica HOM05D004367 ORTHO05D004937 3.3e-38 162.5 184 53.3
arahy.Tifrunner.gnm1.ann1.6ZWE2K Arachis hypogaea HOM05D004367 ORTHO05D004937 4.3e-38 162.2 162 56.2
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 4.3e-38 162.2 116 69.8
TWI38G0759 Tripterygium wilfordii HOM05D004367 ORTHO05D004937 1.6e-37 160.2 118 70.3
arahy.Tifrunner.gnm1.ann1.SV3A8G Arachis hypogaea HOM05D004367 ORTHO05D004937 2.8e-37 159.5 162 55.6
unitig_899.g15291 Utricularia gibba HOM05D004367 ORTHO05D004937 2.8e-37 159.5 167 54.5
MELO3C016705.2 Cucumis melo HOM05D004367 ORTHO05D004937 3.6e-37 159.1 107 73.8
CsaV3_4G033760 Cucumis sativus L. HOM05D004367 ORTHO05D004937 3.6e-37 159.1 122 66.4
Sed0004687 Sechium edule HOM05D004367 ORTHO05D004937 4.7e-37 158.7 171 55.0
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 6.2e-37 158.3 164 56.7
Atru.chr2.2673 Acer truncatum HOM05D004367 ORTHO05D004937 1.1e-36 157.5 179 53.6
Eucgr.F01119 Eucalyptus grandis HOM05D004367 ORTHO05D004937 1.1e-36 157.5 136 62.5
Prupe.4G182900 Prunus persica HOM05D004367 ORTHO05D004937 3.1e-36 156.0 167 53.9
MD11G1244600 Malus domestica HOM05D004367 ORTHO05D004937 4.0e-36 155.6 184 51.6
THA.LOC104799923 Tarenaya hassleriana HOM05D004367 ORTHO05D004937 4.0e-36 155.6 111 67.6
HanXRQChr12g0361521 Helianthus annuus HOM05D004367 ORTHO05D004937 6.8e-36 154.8 134 56.7
Glyma.13G277700 Glycine max HOM05D004367 ORTHO05D004937 8.9e-36 154.5 116 69.0
Gorai.002G071000 Gossypium raimondii HOM05D004367 ORTHO05D004937 8.9e-36 154.5 114 66.7
Ca_01836_v3 Cicer arietinum L. HOM05D004367 ORTHO05D004937 1.2e-35 154.1 118 65.3
Gohir.D01G051200 Gossypium hirsutum HOM05D004367 ORTHO05D004937 1.2e-35 154.1 115 66.1
PGR083G2352 Punica granatum HOM05D004367 ORTHO05D004937 1.2e-35 154.1 180 52.2
ClCG11G018120 Citrullus lanatus HOM05D004367 ORTHO05D004937 1.5e-35 153.7 181 51.4
Lalb_Chr25g0286441 Lupinus albus HOM05D004367 ORTHO05D004937 1.5e-35 153.7 104 72.1
Medtr2g079330 Medicago truncatula HOM05D004367 ORTHO05D004937 1.5e-35 153.7 104 71.2
TPR.G38993 Trifolium pratense HOM05D004367 ORTHO05D004937 2.0e-35 153.3 126 61.9
Hund22921 Selenicereus undatus HOM05D004367 ORTHO05D004937 2.6e-35 152.9 157 54.1
Actinidia09681 Actinidia chinensis HOM05D004367 ORTHO05D004937 3.4e-35 152.5 162 55.6
MBI07_g32654_MAGBIO Magnolia biondii HOM05D004367 ORTHO05D004937 5.8e-35 151.8 176 51.7
Aqoxy4G00819 Aquilegia oxysepala HOM05D004367 ORTHO05D004937 7.5e-35 151.4 127 60.6
QL08p021548 Quercus lobata HOM05D004367 ORTHO05D004937 7.5e-35 151.4 167 55.1
Manes.03G110700 Manihot esculenta HOM05D004367 ORTHO05D004937 9.9e-35 151.0 115 65.2
Psat5g242760 Pisum sativum HOM05D004367 ORTHO05D004937 9.9e-35 151.0 144 57.6
BcaB08g35738 Brassica carinata HOM05D004367 ORTHO05D004937 2.2e-34 149.8 114 65.8
RcHm_v2.0_Chr5g0034001 Rosa chinensis HOM05D004367 ORTHO05D004937 2.9e-34 149.4 129 61.2
Lj3g0015758 Lotus japonicus HOM05D004367 ORTHO05D004937 3.7e-34 149.1 172 48.8
PSO210G1788 Papaver somniferum HOM05D004367 ORTHO05D004937 3.7e-34 149.1 170 50.0
Thhalv10013073m.g Eutrema salsugineum HOM05D004367 ORTHO05D004937 4.9e-34 148.7 140 55.7
Ah.06g184060 Amaranthus hybridus HOM05D004367 ORTHO05D004937 6.4e-34 148.3 117 60.7
Sp6g15840 Schrenkiella parvula HOM05D004367 ORTHO05D004937 6.4e-34 148.3 111 65.8
ECA234G0664 Erigeron canadensis HOM05D004367 ORTHO05D004937 1.4e-33 147.1 123 57.7
FvH4_3g20190 Fragaria vesca HOM05D004367 ORTHO05D004937 1.9e-33 146.7 129 61.2
Lsat_1_v5_gn_5_127821 Lactuca sativa HOM05D004367 ORTHO05D004937 1.9e-33 146.7 111 62.2
Thecc.07G087300 Theobroma cacao HOM05D004367 ORTHO05D004937 1.9e-33 146.7 209 45.0
BcaC04g20419 Brassica carinata HOM05D004367 ORTHO05D004937 2.4e-33 146.4 113 63.7
A10p11150 Brassica napus HOM05D004367 ORTHO05D004937 2.4e-33 146.4 113 62.8
C09p43730 Brassica napus HOM05D004367 ORTHO05D004937 2.4e-33 146.4 113 63.7
BolC9t57258H Brassica oleracea HOM05D004367 ORTHO05D004937 2.4e-33 146.4 113 63.7
BraA10t43208Z Brassica rapa HOM05D004367 ORTHO05D004937 2.4e-33 146.4 113 62.8
AUR62034287 Chenopodium quinoa HOM05D004367 ORTHO05D004937 3.2e-33 146.0 138 58.7
C02p17970 Brassica napus HOM05D004367 ORTHO05D004937 5.4e-33 145.2 130 60.0
BcaB05g22072 Brassica carinata HOM05D004367 ORTHO05D004937 1.2e-32 144.1 128 60.9
AL8G28710 Arabidopsis lyrata HOM05D004367 ORTHO05D004937 2.1e-32 143.3 125 58.4
FAN16G0302 Fragaria x ananassa HOM05D004367 ORTHO05D004937 2.1e-32 143.3 129 60.5
AT5G53770 Arabidopsis thaliana HOM05D004367 ORTHO05D004937 2.7e-32 142.9 124 62.9
CARHR266920 Cardamine hirsuta HOM05D004367 ORTHO05D004937 4.6e-32 142.1 124 59.7
Aa31LG3G10140 Aethionema arabicum HOM05D004367 ORTHO05D004937 7.8e-32 141.4 99 66.7
Sc16g0006960 Simmondsia chinensis HOM05D004367 ORTHO05D004937 1.0e-31 141.0 146 52.7
EL10Ac4g08166 Beta vulgaris HOM05D004367 ORTHO05D004937 1.7e-31 140.2 104 64.4
Carub.0008s1407 Capsella rubella HOM05D004367 ORTHO05D004937 1.7e-31 140.2 124 55.6
QL05p086109 Quercus lobata HOM05D004367 ORTHO05D004937 3.9e-31 139.0 160 53.8
Gohir.A01G064120 Gossypium hirsutum HOM05D004367 ORTHO05D004937 8.6e-31 137.9 158 53.8
CDE10G0244 Ceratophyllum demersum HOM05D004367 ORTHO05D004937 1.5e-30 137.1 123 61.0
SGA_v2.0_scaffold73G24268 Striga asiatica HOM05D004367 ORTHO05D004937 1.5e-30 137.1 168 44.6
CSS0029491 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 5.6e-30 135.2 126 57.9
Migut.M00812 Erythranthe guttata HOM05D004367 ORTHO05D004937 3.6e-29 132.5 97 63.9
Atru.chr2.2651 Acer truncatum HOM05D004367 ORTHO05D004937 2.4e-28 129.8 176 48.3
BcaC03g14387 Brassica carinata HOM05D004367 ORTHO05D004937 2.0e-27 126.7 139 52.5
HPP92_007964 Vanilla planifolia HOM05D004367 ORTHO05D004937 5.8e-27 125.2 167 49.1
HPP92_008014 Vanilla planifolia HOM05D004367 ORTHO05D004937 5.8e-27 125.2 168 49.4
FAN25G3266 Fragaria x ananassa HOM05D004367 ORTHO05D004937 1.7e-26 123.6 175 44.6
CSS0023608 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 2.9e-26 122.9 116 58.6
AUR62029381 Chenopodium quinoa HOM05D004367 ORTHO05D004937 4.2e-25 119.0 128 53.9
ATR0730G126 Amborella trichopoda HOM05D004367 ORTHO05D004937 1.7e-23 113.6 166 43.4
VMungo1080G1289 Vigna mungo HOM05D004367 ORTHO05D004937 5.1e-23 112.1 99 61.6
Zm00001eb157140 Zea mays HOM05D004367 ORTHO05D004937 1.1e-22 110.9 122 48.4
FAN21G3330 Fragaria x ananassa HOM05D004367 ORTHO05D004937 6.2e-21 105.1 72 72.2
SEGI_01564 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 5.8e-11 72.0 152 36.2
Peaxi162Scf00027g02615 Petunia axillaris HOM05D004367 ORTHO05D004937 2.2e-10 70.1 81 46.9
SGA_v2.0_scaffold34G13821 Striga asiatica HOM05D004367 ORTHO05D004937 5.4e-09 65.5 79 48.1
Ciclev10008854m.g Citrus clementina HOM05D004367 ORTHO05D004937 1.9e-06 57.0 34 73.5
SEGI_38687 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 1.9e-06 57.0 163 33.7
AagrBONN_evm.TU.Sc2ySwM_362.745 Anthoceros agrestis HOM05D004367 ORTHO05D004937 4.3e-06 55.8 161 33.5


User provided reference genes

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