Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g33900 Coffea canephora HOM05D004414 ORTHO05D001824 2.3e-100 369.0 199 100.0
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 7.7e-56 221.1 203 65.0
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 2.5e-54 216.1 207 63.8
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 5.9e-48 194.9 202 57.4
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 7.7e-48 194.5 187 62.0
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 6.5e-47 191.4 106 96.2
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 4.2e-46 188.7 205 57.1
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 4.2e-46 188.7 202 58.4
Nitab4.5_0008169g0010 Nicotiana tabacum HOM05D004414 ORTHO05D001824 7.2e-46 188.0 190 59.5
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 9.4e-46 187.6 206 58.3
Sopen01g030520 Solanum pennellii HOM05D004414 ORTHO05D001824 1.6e-45 186.8 189 61.4
Nitab4.5_0002103g0040 Nicotiana tabacum HOM05D004414 ORTHO05D001824 3.6e-45 185.7 190 58.9
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 4.7e-45 185.3 203 56.7
COL.COLO4_09984 Corchorus olitorius HOM05D004414 ORTHO05D001824 1.8e-44 183.3 202 55.4
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 3.0e-44 182.6 203 57.6
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 4.0e-44 182.2 203 55.7
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 8.8e-44 181.0 202 55.9
CAN.G179.18 Capsicum annuum HOM05D004414 ORTHO05D001824 1.2e-43 180.6 189 59.3
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.5e-43 180.3 206 55.8
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 7.5e-43 177.9 199 59.3
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 7.5e-43 177.9 192 58.9
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.7e-42 176.8 195 57.9
Oeu056557.1 Olea europaea HOM05D004414 ORTHO05D001824 2.2e-42 176.4 192 53.6
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 2.8e-42 176.0 200 58.0
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 3.7e-42 175.6 205 55.6
SalBow5G0980 Salvia bowleyana HOM05D004414 ORTHO05D001824 4.8e-42 175.3 191 56.0
SalBow5G2656 Salvia bowleyana HOM05D004414 ORTHO05D001824 4.8e-42 175.3 191 56.0
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 1.1e-41 174.1 200 57.5
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 1.8e-41 173.3 187 57.8
Potri.T126406 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.4e-41 172.9 195 56.9
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 3.1e-41 172.6 206 55.3
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 9.1e-41 171.0 202 54.0
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 1.6e-40 170.2 202 55.0
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.6e-40 170.2 200 54.0
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.6e-40 170.2 200 54.0
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.0e-40 169.9 186 58.1
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 2.7e-40 169.5 200 54.0
Potri.T126606 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.7e-40 169.5 192 57.8
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 2.7e-40 169.5 206 52.4
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 5.9e-40 168.3 207 54.6
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 1.0e-39 167.5 192 56.8
Phvul.005G029800 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 1.3e-39 167.2 194 55.2
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 2.2e-39 166.4 202 53.0
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 3.8e-39 165.6 200 53.5
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 3.8e-39 165.6 199 52.8
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 3.8e-39 165.6 206 53.4
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 1.1e-38 164.1 197 53.3
Nn7g36611 Nelumbo nucifera HOM05D004414 ORTHO05D001824 1.1e-38 164.1 205 51.7
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 1.5e-38 163.7 200 53.0
VMungo1080G0433 Vigna mungo HOM05D004414 ORTHO05D001824 2.1e-37 159.8 196 55.1
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 2.7e-37 159.5 203 51.7
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 4.7e-37 158.7 197 54.8
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 8.0e-37 157.9 199 53.3
Potri.T126906 Populus trichocarpa HOM05D004414 ORTHO05D001824 8.0e-37 157.9 189 56.6
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 2.3e-36 156.4 197 54.3
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 3.0e-36 156.0 207 53.1
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 8.8e-36 154.5 191 53.4
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 1.2e-35 154.1 199 51.3
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 2.0e-35 153.3 196 54.6
Migut.B01215 Erythranthe guttata HOM05D004414 ORTHO05D001824 2.6e-35 152.9 181 52.5
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 3.4e-35 152.5 203 50.7
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 9.8e-35 151.0 203 50.7
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 2.2e-34 149.8 200 52.0
Sed0019716 Sechium edule HOM05D004414 ORTHO05D001824 2.8e-34 149.4 205 46.8
FAN01G0485 Fragaria x ananassa HOM05D004414 ORTHO05D001824 4.8e-34 148.7 204 49.5
Glyma.04G141400 Glycine max HOM05D004414 ORTHO05D001824 8.3e-34 147.9 198 54.0
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 1.1e-33 147.5 203 49.8
Lalb_Chr01g0007921 Lupinus albus HOM05D004414 ORTHO05D001824 1.1e-33 147.5 199 51.8
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 1.8e-33 146.7 204 52.9
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 2.4e-33 146.4 203 50.7
Psat5g217560 Pisum sativum HOM05D004414 ORTHO05D001824 1.2e-32 144.1 172 54.1
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 2.0e-32 143.3 205 47.8
vmacro22867 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 3.5e-32 142.5 161 54.0
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 7.7e-32 141.4 192 52.1
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 1.0e-31 141.0 200 47.5
vmacro22979 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 3.8e-31 139.0 161 53.4
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 1.1e-30 137.5 205 46.3
Aqoxy1G00343 Aquilegia oxysepala HOM05D004414 ORTHO05D001824 1.5e-30 137.1 209 45.9
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 1.5e-30 137.1 200 47.5
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 2.5e-30 136.3 201 49.3
DCAR_003244 Daucus carota HOM05D001375 ORTHO05D001222 3.2e-30 136.0 192 50.0
Phvul.011G209100 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 4.2e-30 135.6 164 56.1
Rhsim07G0065500 Rhododendron simsii HOM05D004414 ORTHO05D001824 4.2e-30 135.6 189 50.3
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 5.5e-30 135.2 201 46.8
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 1.6e-29 133.7 201 47.3
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 5.2e-28 128.6 191 46.1
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 6.8e-28 128.3 159 53.5
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 1.5e-27 127.1 171 48.5
Peaxi162Scf00309g00414 Petunia axillaris HOM05D004414 ORTHO05D001824 2.6e-27 126.3 129 57.4
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 3.4e-27 125.9 192 45.8
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 7.5e-27 124.8 192 45.3
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 7.5e-27 124.8 185 46.5
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 7.5e-27 124.8 192 45.3
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 7.5e-27 124.8 185 44.9
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 1.7e-26 123.6 154 48.1
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 2.2e-26 123.2 154 51.3
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 2.2e-26 123.2 192 43.8
Ah.12g062930 Amaranthus hybridus HOM05D004414 ORTHO05D001824 2.8e-26 122.9 197 47.2
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 2.8e-26 122.9 192 47.4
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 2.8e-26 122.9 190 44.7
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 6.3e-26 121.7 154 50.6
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 6.3e-26 121.7 154 50.6
ECA248G3760 Erigeron canadensis HOM05D004414 ORTHO05D001824 8.3e-26 121.3 140 52.1
Eucgr.J01191 Eucalyptus grandis HOM05D004414 ORTHO05D001824 7.0e-25 118.2 200 42.0
unitig_749.g13482 Utricularia gibba HOM05D005545 ORTHO05D006917 2.7e-24 116.3 157 47.8
HPP92_013972 Vanilla planifolia HOM05D004414 ORTHO05D001824 3.5e-24 115.9 189 46.0
Ah.10g030650 Amaranthus hybridus HOM05D004414 ORTHO05D001824 7.8e-24 114.8 172 47.7
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 1.3e-23 114.0 178 46.1
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 3.8e-23 112.5 191 42.9
PSO384G4230 Papaver somniferum HOM05D004414 ORTHO05D001824 8.6e-23 111.3 183 45.4
Eucgr.G03246 Eucalyptus grandis HOM05D004414 ORTHO05D001824 5.6e-22 108.6 196 41.3
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 7.3e-22 108.2 192 41.1
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 6.1e-21 105.1 183 43.2
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 1.0e-20 104.4 148 47.3
Zm00001eb132420 Zea mays HOM05D004414 ORTHO05D001824 1.0e-20 104.4 159 47.2
HPP92_012100 Vanilla planifolia HOM05D004414 ORTHO05D001824 1.4e-20 104.0 166 45.8
SGA_v2.0_scaffold124G33637 Striga asiatica HOM05D004414 ORTHO05D001824 2.0e-19 100.1 150 46.7
Zm00001eb341790 Zea mays HOM05D004414 ORTHO05D001824 1.1e-17 94.4 201 39.8
Os01g0498200 Oryza sativa ssp. japonica HOM05D004414 ORTHO05D001824 4.1e-17 92.4 192 38.5
CDE10G1254 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 5.4e-17 92.0 172 42.4
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 1.2e-16 90.9 189 39.2
HanXRQChr04g0095061 Helianthus annuus HOM05D004414 ORTHO05D001824 2.7e-16 89.7 172 43.6
SEGI_41395 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 2.7e-16 89.7 192 37.0
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 5.9e-16 88.6 203 36.9
CDE10G0594 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 1.7e-15 87.0 144 46.5
BolC8t50577H Brassica oleracea HOM05D004414 ORTHO05D001824 1.5e-14 84.0 135 45.9
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 1.9e-14 83.6 189 37.0
Lsat_1_v5_gn_1_114861 Lactuca sativa HOM05D004414 ORTHO05D001824 9.5e-14 81.3 129 48.1
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 9.5e-14 81.3 163 37.4
C08p29680 Brassica napus HOM05D004414 ORTHO05D001824 1.4e-12 77.4 145 43.4
Actinidia19458 Actinidia chinensis HOM05D004414 ORTHO05D001824 4.0e-12 75.9 117 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 2.7e-08 63.2 168 32.7
CDE12G0797 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 2.7e-08 63.2 159 37.7
Gohir.A12G014800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.3e-07 60.8 154 33.1
Nn5g30130 Nelumbo nucifera HOM05D003662 ORTHO05D001824 1.7e-07 60.5 179 33.0
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 3.0e-07 59.7 182 31.9
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 3.0e-07 59.7 180 31.7
SEGI_13704 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 3.0e-07 59.7 180 31.7
Pp3c13_6620 Physcomitrium patens HOM05D004414 ORTHO05D001824 3.9e-07 59.3 201 33.3
SMO119G0036 Selaginella moellendorffii HOM05D004414 ORTHO05D001824 5.0e-07 58.9 144 35.4
Mapoly0014s0165 Marchantia polymorpha HOM05D004414 ORTHO05D001824 1.1e-06 57.8 165 32.1
TAR628G0445 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.1e-06 57.8 163 31.3
Gohir.D12G015200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.5e-06 57.4 154 31.8
TAR381G1495 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.5e-06 57.4 161 34.8
Gorai.008G015300 Gossypium raimondii HOM05D003662 ORTHO05D001824 4.3e-06 55.8 154 31.2
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 7.3e-06 55.1 190 29.5
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 9.5e-06 54.7 153 32.0


User provided reference genes

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