Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 2.2e-148 528.9 260 100.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 7.6e-88 327.8 163 98.8
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.9e-52 209.1 162 64.8
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.4e-51 205.7 162 63.6
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.8e-50 203.0 182 55.5
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.1e-49 199.5 163 58.9
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 7.0e-49 198.4 165 63.0
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.2e-48 197.6 165 61.2
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.6e-48 197.2 163 59.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 7.7e-48 194.9 165 60.6
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 4.2e-46 189.1 165 59.4
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.6e-45 187.2 163 60.1
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.8e-44 183.7 163 59.5
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.2e-43 181.0 147 56.5
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 2.6e-43 179.9 141 60.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 6.3e-42 175.3 144 55.6
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.4e-41 174.1 142 62.0
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 9.1e-41 171.4 142 59.2
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.7e-40 169.9 149 56.4
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 5.9e-40 168.7 150 55.3
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.7e-40 168.3 151 54.3
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.3e-39 167.5 149 57.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.7e-39 167.2 151 54.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.2e-39 166.8 141 54.6
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 3.8e-39 166.0 142 56.3
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.5e-39 165.2 142 59.2
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.5e-39 165.2 149 57.0
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 8.5e-39 164.9 143 53.8
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.5e-38 164.1 147 57.8
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.5e-38 164.1 143 53.8
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.9e-38 163.7 164 54.3
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.9e-38 163.7 151 53.6
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.5e-38 163.3 149 55.7
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.2e-38 162.9 149 55.7
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 4.2e-38 162.5 139 56.1
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 4.2e-38 162.5 137 56.9
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 4.2e-38 162.5 143 54.5
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 5.5e-38 162.2 143 54.5
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.5e-38 162.2 151 53.0
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 7.2e-38 161.8 142 57.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 7.2e-38 161.8 142 57.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 7.2e-38 161.8 139 56.8
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 7.2e-38 161.8 139 55.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 7.2e-38 161.8 148 53.4
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 9.4e-38 161.4 145 53.8
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 9.4e-38 161.4 143 55.2
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.4e-38 161.4 143 53.1
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 9.4e-38 161.4 148 52.7
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.2e-37 161.0 139 59.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.6e-37 160.6 150 51.3
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.6e-37 160.6 142 56.3
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.7e-37 159.8 151 54.3
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.7e-37 159.8 144 55.6
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 2.7e-37 159.8 142 55.6
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.7e-37 159.8 142 57.7
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.7e-37 159.8 142 54.9
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 3.6e-37 159.5 146 54.1
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 3.6e-37 159.5 150 53.3
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.7e-37 159.1 145 52.4
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 4.7e-37 159.1 149 52.3
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 4.7e-37 159.1 137 56.2
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 6.1e-37 158.7 146 56.2
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 8.0e-37 158.3 150 53.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 8.0e-37 158.3 142 57.0
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.4e-36 157.5 143 53.8
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.4e-36 157.5 142 56.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 4.0e-36 156.0 144 53.5
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 4.0e-36 156.0 142 55.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 8.8e-36 154.8 143 53.1
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.6e-35 153.3 140 54.3
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.6e-35 153.3 142 51.4
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.6e-35 153.3 142 51.4
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.6e-35 153.3 141 53.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 3.4e-35 152.9 141 54.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 4.4e-35 152.5 146 50.0
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 4.4e-35 152.5 141 53.2
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 4.4e-35 152.5 139 53.2
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 4.4e-35 152.5 142 54.2
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 5.7e-35 152.1 142 52.1
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 5.7e-35 152.1 143 51.0
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 7.5e-35 151.8 142 52.8
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 9.8e-35 151.4 141 53.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.7e-34 150.6 140 53.6
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.2e-34 150.2 157 49.7
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.2e-34 150.2 143 51.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.2e-34 150.2 181 44.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 2.8e-34 149.8 161 49.7
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.8e-34 149.8 161 49.7
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.8e-34 149.8 141 53.2
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 3.7e-34 149.4 148 50.0
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 4.8e-34 149.1 135 54.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 4.8e-34 149.1 136 54.4
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 8.3e-34 148.3 141 53.2
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.1e-33 147.9 140 53.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.4e-33 147.5 141 51.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.8e-33 147.1 141 52.5
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 2.4e-33 146.7 143 52.4
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.4e-33 146.7 139 51.8
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.1e-33 146.4 148 49.3
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-32 144.4 141 51.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.7e-32 143.3 146 52.7
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 4.5e-32 142.5 141 51.1
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 4.5e-32 142.5 141 51.1
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.0e-31 141.4 141 51.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.0e-31 141.4 169 48.5
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.0e-31 141.4 141 51.1
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.7e-31 140.6 137 48.2
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.3e-31 140.2 141 48.2
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.9e-30 137.1 140 40.7
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 3.3e-30 136.3 141 49.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.2e-30 136.0 139 44.6
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 7.2e-30 135.2 150 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 2.6e-27 126.7 148 45.3
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 4.4e-27 125.9 148 48.6
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.3e-26 124.4 137 43.8
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.2e-26 123.6 104 55.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 6.3e-26 122.1 140 47.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.4e-25 120.9 105 56.2
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.4e-25 120.9 142 46.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.2e-24 117.9 163 41.1
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.7e-24 116.7 144 44.4
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.9e-23 113.2 102 53.9
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.8e-21 106.7 137 40.1
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.4e-20 104.4 142 39.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 4.0e-20 102.8 138 42.8
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 3.4e-19 99.8 124 37.1
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.4e-19 99.4 142 38.0
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 2.9e-18 96.7 139 38.1
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.1e-17 94.7 142 37.3
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 4.1e-17 92.8 81 55.6
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.1e-17 92.8 81 55.6
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.9e-14 84.0 81 50.6
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 9.5e-14 81.6 153 34.0
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 2.3e-12 77.0 78 52.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 7.5e-11 72.0 102 30.4
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 5.6e-06 55.8 116 34.5


User provided reference genes

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