Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g30140 Coffea canephora HOM05D002990 ORTHO05D025120 2.7e-100 368.6 181 100.0
Cc00_g35830 Coffea canephora HOM05D002990 ORTHO05D025120 6.3e-65 251.1 135 94.8
Cc08_g04530 Coffea canephora HOM05D002990 ORTHO05D025120 3.8e-62 241.9 162 81.5
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 4.9e-25 118.6 61 95.1
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 3.6e-20 102.4 63 79.4
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 3.6e-20 102.4 61 82.0
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 1.1e-19 100.9 63 77.8
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 1.4e-19 100.5 63 76.2
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 1.4e-19 100.5 61 80.3
Lj5C267G4 Lonicera japonica HOM05D002990 ORTHO05D003954 1.8e-19 100.1 61 82.0
CSS0049984 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 2.3e-19 99.8 61 77.0
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 3.1e-19 99.4 63 74.6
vmacro19861 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 3.1e-19 99.4 63 76.2
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 4.0e-19 99.0 61 77.0
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 5.2e-19 98.6 61 78.7
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 5.2e-19 98.6 63 77.8
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 6.8e-19 98.2 61 77.0
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 6.8e-19 98.2 61 77.0
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 6.8e-19 98.2 61 78.7
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 8.9e-19 97.8 61 77.0
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 1.2e-18 97.4 61 80.3
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 1.5e-18 97.1 61 75.4
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 1.5e-18 97.1 82 62.2
Lj9C298T10 Lonicera japonica HOM05D002990 ORTHO05D003954 1.5e-18 97.1 61 78.7
PSO210G5298 Papaver somniferum HOM05D002990 ORTHO05D003954 1.5e-18 97.1 61 77.0
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 2.0e-18 96.7 61 75.4
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 2.6e-18 96.3 63 76.2
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 2.6e-18 96.3 61 77.0
PGR065G0001 Punica granatum HOM05D002990 ORTHO05D003954 2.6e-18 96.3 61 77.0
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.4e-18 95.9 63 76.2
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 4.4e-18 95.5 61 77.0
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.4e-18 95.5 61 77.0
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 4.4e-18 95.5 61 77.0
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.4e-18 95.5 63 76.2
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.4e-18 95.5 61 77.0
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 4.4e-18 95.5 61 78.7
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 5.8e-18 95.1 61 75.4
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 5.8e-18 95.1 63 76.2
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 5.8e-18 95.1 61 77.0
PSO832G0554 Papaver somniferum HOM05D002990 ORTHO05D003954 5.8e-18 95.1 61 75.4
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 7.5e-18 94.7 61 75.4
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 7.5e-18 94.7 61 75.4
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 7.5e-18 94.7 61 77.0
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 9.9e-18 94.4 61 75.4
Nitab4.5_0000787g0120 Nicotiana tabacum HOM05D002990 ORTHO05D003954 9.9e-18 94.4 61 73.8
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 9.9e-18 94.4 61 73.8
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.3e-17 94.0 61 77.0
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.3e-17 94.0 61 77.0
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 75.4
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 75.4
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 75.4
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 77.0
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 77.0
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 77.0
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 77.0
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 77.0
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 1.7e-17 93.6 61 75.4
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 2.2e-17 93.2 61 72.1
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 2.9e-17 92.8 61 73.8
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 2.9e-17 92.8 61 72.1
Peaxi162Scf00011g01423 Petunia axillaris HOM05D002990 ORTHO05D003954 2.9e-17 92.8 61 73.8
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 2.9e-17 92.8 61 73.8
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.7e-17 92.4 61 73.8
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 3.7e-17 92.4 61 73.8
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 3.7e-17 92.4 61 73.8
TAR625G1487 Trochodendron aralioides HOM05D002990 ORTHO05D003954 3.7e-17 92.4 60 71.7
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 4.9e-17 92.0 61 72.1
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 4.9e-17 92.0 61 75.4
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 4.9e-17 92.0 61 73.8
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 6.4e-17 91.7 61 70.5
MBI14_g22163_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 6.4e-17 91.7 61 70.5
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 8.3e-17 91.3 61 68.9
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.1e-16 90.9 61 72.1
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 1.1e-16 90.9 61 68.9
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 1.1e-16 90.9 61 68.9
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 1.1e-16 90.9 61 72.1
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 1.1e-16 90.9 61 72.1
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 1.4e-16 90.5 61 73.8
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 1.4e-16 90.5 61 73.8
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 1.4e-16 90.5 59 74.6
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 68.9
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 68.9
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 73.8
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 73.8
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 73.8
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 72.1
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 72.1
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 73.8
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 1.9e-16 90.1 61 67.2
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 2.4e-16 89.7 61 72.1
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 2.4e-16 89.7 61 72.1
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 2.4e-16 89.7 61 72.1
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 2.4e-16 89.7 61 70.5
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 2.4e-16 89.7 61 67.2
Thecc.02G008000 Theobroma cacao HOM05D002990 ORTHO05D003954 2.4e-16 89.7 61 68.9
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 3.2e-16 89.4 61 72.1
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 4.1e-16 89.0 61 70.5
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 4.1e-16 89.0 61 70.5
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 4.1e-16 89.0 61 70.5
SEGI_30717 Sequoiadendron giganteum HOM05D002990 ORTHO05D003954 4.1e-16 89.0 61 68.9
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 4.1e-16 89.0 61 73.8
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 4.1e-16 89.0 61 73.8
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 5.4e-16 88.6 61 68.9
Potri.015G125400 Populus trichocarpa HOM05D002990 ORTHO05D003954 5.4e-16 88.6 61 70.5
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 5.4e-16 88.6 61 67.2
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 5.4e-16 88.6 61 67.2
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 5.4e-16 88.6 61 68.9
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 7.1e-16 88.2 61 70.5
Cpa.g.sc30.147 Carica papaya HOM05D002990 ORTHO05D003954 7.1e-16 88.2 61 70.5
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 7.1e-16 88.2 61 68.9
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 7.1e-16 88.2 65 67.7
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 7.1e-16 88.2 63 71.4
Rhsim05G0202100 Rhododendron simsii HOM05D002990 ORTHO05D025120 7.1e-16 88.2 60 71.7
Ah.06g187310 Amaranthus hybridus HOM05D002990 ORTHO05D003954 1.2e-15 87.4 61 68.9
Haze_16449 Corylus avellana HOM05D002990 ORTHO05D003954 1.2e-15 87.4 61 68.9
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 1.2e-15 87.4 63 69.8
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 1.2e-15 87.4 61 70.5
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 1.2e-15 87.4 61 70.5
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 1.6e-15 87.0 61 68.9
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 1.6e-15 87.0 61 67.2
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 1.6e-15 87.0 61 68.9
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 1.6e-15 87.0 61 68.9
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 2.1e-15 86.7 61 68.9
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 2.1e-15 86.7 61 68.9
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 2.1e-15 86.7 61 70.5
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 2.1e-15 86.7 61 72.1
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 2.1e-15 86.7 61 67.2
Sabra12G0094700 Salix brachista HOM05D002990 ORTHO05D003954 2.1e-15 86.7 71 64.8
Haze_04601 Corylus avellana HOM05D002990 ORTHO05D003954 2.7e-15 86.3 61 67.2
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 2.7e-15 86.3 61 67.2
MBI19_g42889_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 2.7e-15 86.3 61 67.2
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 2.7e-15 86.3 61 68.9
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 3.5e-15 85.9 60 70.0
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 4.6e-15 85.5 61 67.2
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 4.6e-15 85.5 61 68.9
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 4.6e-15 85.5 61 63.9
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 7.8e-15 84.7 61 67.2
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 7.8e-15 84.7 61 67.2
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 1.0e-14 84.3 61 67.2
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 1.0e-14 84.3 61 67.2
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 1.3e-14 84.0 61 65.6
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 3.0e-14 82.8 61 65.6
MBI15_g43444_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 3.9e-14 82.4 73 60.3
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 5.1e-14 82.0 62 66.1
Sc09g0003570 Simmondsia chinensis HOM05D002990 ORTHO05D003954 5.1e-14 82.0 56 67.9
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 5.1e-14 82.0 61 65.6
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 8.6e-14 81.3 61 68.9
Aa31LG11G5670 Aethionema arabicum HOM05D002990 ORTHO05D003954 1.9e-13 80.1 63 65.1
Carub.0006s0395 Capsella rubella HOM05D002990 ORTHO05D003954 1.9e-13 80.1 63 63.5
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 2.5e-13 79.7 54 72.2
AL6G14720 Arabidopsis lyrata HOM05D002990 ORTHO05D003954 7.3e-13 78.2 63 61.9
Os01g0833700 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 7.3e-13 78.2 61 63.9
CARHR277810 Cardamine hirsuta HOM05D002990 ORTHO05D003954 1.2e-12 77.4 64 60.9
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 1.2e-12 77.4 61 62.3
BcaB05g21739 Brassica carinata HOM05D002990 ORTHO05D003954 1.6e-12 77.0 64 60.9
Sp6g37790 Schrenkiella parvula HOM05D002990 ORTHO05D003954 1.6e-12 77.0 63 60.3
AT5G05010 Arabidopsis thaliana HOM05D002990 ORTHO05D003954 2.8e-12 76.3 63 60.3
BcaC06g32216 Brassica carinata HOM05D002990 ORTHO05D003954 2.8e-12 76.3 63 60.3
BolC9t59926H Brassica oleracea HOM05D002990 ORTHO05D003954 2.8e-12 76.3 63 60.3
BcaC03g13141 Brassica carinata HOM05D002990 ORTHO05D003954 3.6e-12 75.9 63 60.3
C02p02130 Brassica napus HOM05D002990 ORTHO05D003954 3.6e-12 75.9 63 60.3
BolC2t06181H Brassica oleracea HOM05D002990 ORTHO05D003954 3.6e-12 75.9 63 60.3
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 4.7e-12 75.5 61 59.0
Thhalv10013243m.g Eutrema salsugineum HOM05D002990 ORTHO05D003954 4.7e-12 75.5 65 58.5
CARHR208250 Cardamine hirsuta HOM05D002990 ORTHO05D003954 6.2e-12 75.1 63 58.7
BraA02t04830Z Brassica rapa HOM05D002990 ORTHO05D003954 1.8e-11 73.6 63 58.7
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 2.4e-11 73.2 64 59.4
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 2.4e-11 73.2 64 57.8
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 2.4e-11 73.2 64 59.4
Pp3c20_16550 Physcomitrium patens HOM05D002990 ORTHO05D003954 4.0e-11 72.4 61 57.4
Pp3c23_8750 Physcomitrium patens HOM05D002990 ORTHO05D003954 6.8e-11 71.6 61 55.7
ATR1132G100 Amborella trichopoda HOM05D002990 ORTHO05D003954 1.2e-10 70.9 61 52.5
Pp3c24_4890 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.5e-10 70.5 61 55.7
Pp3c8_9870 Physcomitrium patens HOM05D002990 ORTHO05D003954 2.0e-10 70.1 61 54.1
Mapoly0022s0045 Marchantia polymorpha HOM05D002990 ORTHO05D003954 2.6e-10 69.7 61 50.8
CDE04G3634 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.2e-09 66.6 40 77.5
SMO134G0021 Selaginella moellendorffii HOM05D002990 ORTHO05D003954 2.2e-09 66.6 61 50.8
ATR0824G151 Amborella trichopoda HOM05D002990 ORTHO05D003954 2.9e-09 66.2 61 52.5
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 6.4e-09 65.1 47 66.0
BraA10t45158Z Brassica rapa HOM05D002990 ORTHO05D003954 2.4e-08 63.2 86 44.2
C06p51810 Brassica napus HOM05D002990 ORTHO05D024332 3.2e-08 62.8 79 44.3
BcaC08g47628 Brassica carinata HOM05D002990 ORTHO05D024332 1.2e-07 60.8 61 52.5
Os08g0367625 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D025120 3.5e-07 59.3 51 62.7
CBR_g30127 Chara braunii HOM05D002990 ORTHO05D003954 7.8e-07 58.2 61 42.6
Actinidia26175 Actinidia chinensis HOM05D002990 ORTHO05D003954 3.9e-06 55.8 33 75.8
AUR62011579 Chenopodium quinoa HOM05D002990 ORTHO05D003954 6.6e-06 55.1 35 74.3


User provided reference genes

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