Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28640 Coffea canephora HOM05D005293 ORTHO05D006764 4.2e-49 197.6 93 100.0
Nitab4.5_0001338g0090 Nicotiana tabacum HOM05D005293 ORTHO05D006764 7.6e-22 107.1 58 87.9
COL.COLO4_05541 Corchorus olitorius HOM05D005293 ORTHO05D006764 6.4e-21 104.0 71 70.4
Ciclev10000268m.g Citrus clementina HOM05D005293 ORTHO05D006764 8.4e-21 103.6 57 87.7
Solyc01g100650.3 Solanum lycopersicum HOM05D005293 ORTHO05D006764 1.9e-20 102.4 53 92.5
Sopen01g044170 Solanum pennellii HOM05D005293 ORTHO05D006764 1.9e-20 102.4 53 92.5
Atru.chr2.352 Acer truncatum HOM05D005293 ORTHO05D006764 6.0e-19 97.4 53 86.8
Hma1.2p1_0008F-1.1_g005500 Hydrangea macrophylla HOM05D005293 ORTHO05D006764 6.0e-19 97.4 53 88.7
BraA09t37523Z Brassica rapa HOM05D005293 ORTHO05D006764 7.8e-19 97.1 70 68.6
A09p19050 Brassica napus HOM05D005293 ORTHO05D006764 1.0e-18 96.7 55 83.6
Migut.N00939 Erythranthe guttata HOM05D005293 ORTHO05D006764 1.3e-18 96.3 53 84.9
THA.LOC104820617 Tarenaya hassleriana HOM05D005293 ORTHO05D006764 1.3e-18 96.3 53 86.8
C09p23880 Brassica napus HOM05D005293 ORTHO05D006764 1.7e-18 95.9 55 81.8
BolC9t55314H Brassica oleracea HOM05D005293 ORTHO05D006764 1.7e-18 95.9 55 81.8
FAN14G3496 Fragaria x ananassa HOM05D005293 ORTHO05D006764 1.7e-18 95.9 53 86.8
CARHR055040 Cardamine hirsuta HOM05D005293 ORTHO05D006764 2.3e-18 95.5 53 84.9
Lj1g0018442 Lotus japonicus HOM05D005293 ORTHO05D006764 2.3e-18 95.5 53 86.8
Aa31LG2G11430 Aethionema arabicum HOM05D005293 ORTHO05D006764 3.0e-18 95.1 53 86.8
Sc16g0009090 Simmondsia chinensis HOM05D005293 ORTHO05D006764 3.0e-18 95.1 53 84.9
Thecc.05G324300 Theobroma cacao HOM05D005293 ORTHO05D006764 3.0e-18 95.1 53 84.9
Carub.0002s0755 Capsella rubella HOM05D005293 ORTHO05D006764 3.9e-18 94.7 53 86.8
Cpa.g.sc48.173 Carica papaya HOM05D005293 ORTHO05D006764 3.9e-18 94.7 53 84.9
Dinv30900 Davidia involucrata HOM05D005293 ORTHO05D006764 3.9e-18 94.7 53 84.9
Prupe.6G311900 Prunus persica HOM05D005293 ORTHO05D006764 3.9e-18 94.7 53 86.8
vmacro01574 Vaccinium macrocarpon HOM05D005293 ORTHO05D006764 3.9e-18 94.7 63 73.0
AL1G66250 Arabidopsis lyrata HOM05D005293 ORTHO05D006764 5.1e-18 94.4 53 84.9
CiPaw.07G030400 Carya illinoinensis HOM05D005293 ORTHO05D006764 5.1e-18 94.4 53 84.9
Glyma.19G228100 Glycine max HOM05D005293 ORTHO05D006764 5.1e-18 94.4 53 84.9
CANSAT54G1875 Cannabis sativa HOM05D005293 ORTHO05D006764 6.6e-18 94.0 53 84.9
Oeu016565.1 Olea europaea HOM05D005293 ORTHO05D006764 6.6e-18 94.0 53 81.1
Phvul.001G224700 Phaseolus vulgaris HOM05D005293 ORTHO05D006764 6.6e-18 94.0 53 84.9
BcaB07g31127 Brassica carinata HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 83.0
Thhalv10023228m.g Eutrema salsugineum HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 83.0
FvH4_6g07620 Fragaria vesca HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 84.9
FAN09G2780 Fragaria x ananassa HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 84.9
Sp2g06270 Schrenkiella parvula HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 83.0
TWI56G0054 Tripterygium wilfordii HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 83.0
GSVIVG01031253001 Vitis vinifera HOM05D005293 ORTHO05D006764 8.6e-18 93.6 53 84.9
ATR0693G200 Amborella trichopoda HOM05D005293 ORTHO05D006764 1.1e-17 93.2 53 84.9
CSS0034972 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 1.1e-17 93.2 53 84.9
FAN05G3958 Fragaria x ananassa HOM05D005293 ORTHO05D006764 1.1e-17 93.2 53 84.9
AT1G56500 Arabidopsis thaliana HOM05D005293 ORTHO05D006764 1.5e-17 92.8 53 83.0
Gohir.D13G115500 Gossypium hirsutum HOM05D005293 ORTHO05D006764 1.5e-17 92.8 53 84.9
Gorai.013G130100 Gossypium raimondii HOM05D005293 ORTHO05D006764 1.5e-17 92.8 53 84.9
Manes.09G177500 Manihot esculenta HOM05D005293 ORTHO05D006764 1.5e-17 92.8 53 84.9
TAR362G0639 Trochodendron aralioides HOM05D005293 ORTHO05D006764 1.5e-17 92.8 53 84.9
arahy.Tifrunner.gnm1.ann1.KQC6RY Arachis hypogaea HOM05D005293 ORTHO05D006764 1.9e-17 92.4 53 81.1
MSTRG.27933 Avicennia marina HOM05D005293 ORTHO05D006764 1.9e-17 92.4 50 90.0
BcaC04g22064 Brassica carinata HOM05D005293 ORTHO05D006764 1.9e-17 92.4 53 81.1
ECA232G4555 Erigeron canadensis HOM05D005293 ORTHO05D006764 1.9e-17 92.4 53 83.0
HanXRQChr09g0258691 Helianthus annuus HOM05D005293 ORTHO05D006764 1.9e-17 92.4 53 83.0
Medtr7g112140 Medicago truncatula HOM05D005293 ORTHO05D006764 1.9e-17 92.4 53 83.0
SGA_v2.0_scaffold37G14600 Striga asiatica HOM05D005293 ORTHO05D006764 2.5e-17 92.0 53 79.2
CSS0026167 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 3.3e-17 91.7 53 83.0
RcHm_v2.0_Chr3g0457281 Rosa chinensis HOM05D005293 ORTHO05D006764 3.3e-17 91.7 53 83.0
Sed0019289 Sechium edule HOM05D005293 ORTHO05D006764 3.3e-17 91.7 53 79.2
Lsat_1_v5_gn_8_116220 Lactuca sativa HOM05D005293 ORTHO05D006764 4.3e-17 91.3 53 83.0
TPR.G1667 Trifolium pratense HOM05D005293 ORTHO05D006764 4.3e-17 91.3 53 81.1
MD12G1204700 Malus domestica HOM05D005293 ORTHO05D006764 7.3e-17 90.5 50 86.0
PGR031G3792 Punica granatum HOM05D005293 ORTHO05D006764 7.3e-17 90.5 53 81.1
QL03p014223 Quercus lobata HOM05D005293 ORTHO05D006764 7.3e-17 90.5 53 81.1
Ca_09301_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 9.6e-17 90.1 53 81.1
MELO3C015255.2 Cucumis melo HOM05D005293 ORTHO05D006764 9.6e-17 90.1 53 79.2
CsaV3_1G037900 Cucumis sativus L. HOM05D005293 ORTHO05D006764 9.6e-17 90.1 53 79.2
Duzib106G1789 Durio zibethinus HOM05D005293 ORTHO05D006764 9.6e-17 90.1 53 81.1
Lalb_Chr04g0260421 Lupinus albus HOM05D005293 ORTHO05D006764 9.6e-17 90.1 53 81.1
Actinidia16868 Actinidia chinensis HOM05D005293 ORTHO05D006764 1.2e-16 89.7 53 81.1
Aqoxy7G02580 Aquilegia oxysepala HOM05D005293 ORTHO05D006764 1.6e-16 89.4 53 79.2
Cfa006727 Carpinus fangiana HOM05D005293 ORTHO05D006764 1.6e-16 89.4 53 81.1
Psat3g012680 Pisum sativum HOM05D005293 ORTHO05D006764 1.6e-16 89.4 53 79.2
EL10Ac4g09472 Beta vulgaris HOM05D005293 ORTHO05D006764 2.1e-16 89.0 53 79.2
Nn3g21747 Nelumbo nucifera HOM05D005293 ORTHO05D006764 2.1e-16 89.0 53 79.2
HPP92_013515 Vanilla planifolia HOM05D005293 ORTHO05D006764 2.1e-16 89.0 53 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2939 Anthoceros agrestis HOM05D005293 ORTHO05D006764 2.8e-16 88.6 53 77.4
AUR62000381 Chenopodium quinoa HOM05D005293 ORTHO05D006764 2.8e-16 88.6 53 79.2
AUR62006736 Chenopodium quinoa HOM05D005293 ORTHO05D006764 2.8e-16 88.6 53 79.2
Eucgr.H03302 Eucalyptus grandis HOM05D005293 ORTHO05D006764 3.6e-16 88.2 50 82.0
Gohir.A13G112600 Gossypium hirsutum HOM05D005293 ORTHO05D006764 3.6e-16 88.2 53 81.1
PSO478G4822 Papaver somniferum HOM05D005293 ORTHO05D006764 3.6e-16 88.2 53 77.4
PSO782G5414 Papaver somniferum HOM05D005293 ORTHO05D006764 3.6e-16 88.2 53 77.4
Potri.013G007800 Populus trichocarpa HOM05D005293 ORTHO05D006764 3.6e-16 88.2 53 77.4
Ah.06g196020 Amaranthus hybridus HOM05D005293 ORTHO05D006764 4.7e-16 87.8 53 75.5
DCAR_029342 Daucus carota HOM05D005293 ORTHO05D006764 4.7e-16 87.8 53 77.4
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 6.2e-16 87.4 47 87.2
Mapoly0010s0206 Marchantia polymorpha HOM05D005293 ORTHO05D006764 1.4e-15 86.3 53 75.5
SEGI_20624 Sequoiadendron giganteum HOM05D005293 ORTHO05D006764 1.4e-15 86.3 53 75.5
Zm00001eb014960 Zea mays HOM05D005293 ORTHO05D006764 1.4e-15 86.3 53 75.5
Pp3c22_14790 Physcomitrium patens HOM05D005293 ORTHO05D006764 1.8e-15 85.9 62 69.4
Sabra13G0006700 Salix brachista HOM05D005293 ORTHO05D006764 2.4e-15 85.5 46 87.0
MBI19_g03259_MAGBIO Magnolia biondii HOM05D005293 ORTHO05D006764 4.0e-15 84.7 50 80.0
Lj5C327G4 Lonicera japonica HOM05D005293 ORTHO05D006764 8.9e-15 83.6 47 83.0
SMO358G0750 Selaginella moellendorffii HOM05D005293 ORTHO05D006764 5.8e-14 80.9 53 67.9
Cre13.g586050 Chlamydomonas reinhardtii HOM05D005293 ORTHO05D006764 1.3e-13 79.7 81 49.4
CBR_g26293 Chara braunii HOM05D005293 ORTHO05D006764 1.7e-13 79.3 53 67.9
Haze_04033 Corylus avellana HOM05D005293 ORTHO05D006764 1.3e-10 69.7 53 64.2
Nitab4.5_0004525g0070 Nicotiana tabacum HOM05D005293 ORTHO05D006764 1.3e-08 63.2 31 93.5
unitig_746.g26883 Utricularia gibba HOM05D005293 ORTHO05D006764 4.0e-07 58.2 31 83.9


User provided reference genes

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