Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g26970 Coffea canephora HOM05D001068 ORTHO05D013681 1.5e-33 145.6 72 100.0
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 3.4e-30 134.4 75 92.0
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 3.5e-27 124.4 75 81.3
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 7.9e-27 123.2 73 82.2
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 1.8e-26 122.1 75 80.0
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 2.3e-26 121.7 75 80.0
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 3.9e-26 120.9 75 77.3
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 5.1e-26 120.6 75 78.7
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 6.7e-26 120.2 75 77.3
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 8.7e-26 119.8 75 78.7
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 1.1e-25 119.4 75 77.3
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 1.5e-25 119.0 75 76.0
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 1.5e-25 119.0 75 74.7
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 2.5e-25 118.2 75 76.0
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 2.5e-25 118.2 73 78.1
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 3.3e-25 117.9 75 76.0
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 5.7e-25 117.1 75 74.7
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 7.4e-25 116.7 75 73.3
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 7.4e-25 116.7 75 73.3
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 7.4e-25 116.7 74 74.3
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 7.4e-25 116.7 75 76.0
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 9.6e-25 116.3 74 74.3
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 1.3e-24 115.9 75 73.3
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 1.3e-24 115.9 75 76.0
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 1.3e-24 115.9 73 76.7
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 1.6e-24 115.5 74 74.3
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 1.6e-24 115.5 75 77.3
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 1.6e-24 115.5 73 75.3
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 2.1e-24 115.2 73 74.0
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 2.8e-24 114.8 75 74.7
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 2.8e-24 114.8 75 74.7
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 3.7e-24 114.4 75 74.7
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 4.8e-24 114.0 75 73.3
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 4.8e-24 114.0 75 69.3
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 6.2e-24 113.6 75 73.3
Oeu038268.1 Olea europaea HOM05D001068 ORTHO05D013681 6.2e-24 113.6 75 74.7
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 6.2e-24 113.6 75 73.3
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 8.2e-24 113.2 73 74.0
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 1.1e-23 112.8 75 70.7
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 1.1e-23 112.8 75 73.3
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 1.4e-23 112.5 75 70.7
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 1.8e-23 112.1 75 73.3
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 2.4e-23 111.7 73 75.3
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.4e-23 111.7 73 72.6
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 2.4e-23 111.7 75 69.3
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 3.1e-23 111.3 75 69.3
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 3.1e-23 111.3 72 73.6
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 4.0e-23 110.9 75 73.3
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 4.0e-23 110.9 73 71.2
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 4.0e-23 110.9 75 72.0
GSVIVG01020650001 Vitis vinifera HOM05D001068 ORTHO05D002190 4.0e-23 110.9 73 71.2
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 5.3e-23 110.5 75 70.7
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 5.3e-23 110.5 72 76.4
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 5.3e-23 110.5 75 69.3
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 5.3e-23 110.5 75 68.0
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 6.9e-23 110.2 72 72.2
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 9.0e-23 109.8 73 71.2
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 9.0e-23 109.8 75 69.3
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 9.0e-23 109.8 75 69.3
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 1.2e-22 109.4 75 70.7
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 1.2e-22 109.4 73 69.9
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.2e-22 109.4 75 69.3
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 2.0e-22 108.6 71 70.4
Gohir.D02G176600 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.0e-22 108.6 75 69.3
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 2.6e-22 108.2 74 67.6
VMungo1127G1678 Vigna mungo HOM05D001068 ORTHO05D002190 2.6e-22 108.2 71 69.0
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 3.4e-22 107.8 72 70.8
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 3.4e-22 107.8 73 68.5
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 3.4e-22 107.8 73 68.5
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 4.5e-22 107.5 71 69.0
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.5e-22 107.5 75 70.7
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 4.5e-22 107.5 75 70.7
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 4.5e-22 107.5 73 69.9
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 5.8e-22 107.1 73 69.9
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 7.6e-22 106.7 72 69.4
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 7.6e-22 106.7 72 69.4
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 7.6e-22 106.7 75 66.7
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 1.0e-21 106.3 72 69.4
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 1.0e-21 106.3 72 69.4
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.0e-21 106.3 75 69.3
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 1.0e-21 106.3 75 66.7
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 1.3e-21 105.9 73 68.5
BcaC05g24277 Brassica carinata HOM05D001068 ORTHO05D002190 1.7e-21 105.5 72 68.1
BcaC05g24285 Brassica carinata HOM05D001068 ORTHO05D013681 1.7e-21 105.5 72 68.1
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 1.7e-21 105.5 72 68.1
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 1.7e-21 105.5 72 68.1
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 1.7e-21 105.5 73 65.8
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 2.9e-21 104.8 72 68.1
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 2.9e-21 104.8 72 68.1
AT3G06690 Arabidopsis thaliana HOM05D001068 ORTHO05D013681 2.9e-21 104.8 72 68.1
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 2.9e-21 104.8 75 68.0
HanXRQChr16g0526411 Helianthus annuus HOM05D001068 ORTHO05D013681 2.9e-21 104.8 72 66.7
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 2.9e-21 104.8 71 66.2
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 3.8e-21 104.4 72 68.1
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 3.8e-21 104.4 72 68.1
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 3.8e-21 104.4 75 66.7
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 5.0e-21 104.0 72 69.4
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.0e-21 104.0 75 66.7
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 5.0e-21 104.0 75 64.0
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 6.5e-21 103.6 72 68.1
MD09G1241500 Malus domestica HOM05D001068 ORTHO05D013681 8.4e-21 103.2 71 69.0
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 1.9e-20 102.1 72 66.7
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 2.5e-20 101.7 71 67.6
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 2.5e-20 101.7 72 68.1
GSVIVG01023773001 Vitis vinifera HOM05D001068 ORTHO05D013681 2.5e-20 101.7 73 65.8
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 3.2e-20 101.3 74 62.2
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 4.2e-20 100.9 73 63.0
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 4.2e-20 100.9 72 66.7
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.2e-20 100.9 72 66.7
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 4.2e-20 100.9 72 66.7
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 5.5e-20 100.5 72 66.7
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 7.1e-20 100.1 72 62.5
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.1e-20 100.1 72 66.7
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.1e-20 100.1 72 66.7
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.1e-20 100.1 72 66.7
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.1e-20 100.1 72 66.7
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 9.3e-20 99.8 70 65.7
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 9.3e-20 99.8 70 65.7
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 9.3e-20 99.8 73 60.3
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 1.2e-19 99.4 75 64.0
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 1.2e-19 99.4 75 64.0
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.1e-19 98.6 72 65.3
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 2.7e-19 98.2 75 60.0
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 6.1e-19 97.1 70 64.3
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 6.1e-19 97.1 70 64.3
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 6.1e-19 97.1 70 64.3
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 1.0e-18 96.3 70 64.3
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 3.9e-18 94.4 75 60.0
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 1.3e-16 89.4 71 59.2
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 4.8e-16 87.4 69 58.0
Carub.0001s0567 Capsella rubella HOM05D001068 ORTHO05D013681 1.2e-14 82.8 69 59.4
SEGI_20994 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 2.6e-14 81.6 69 56.5
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 4.5e-14 80.9 69 56.5
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.7e-14 80.1 68 55.9
Lsat_1_v5_gn_4_28500 Lactuca sativa HOM05D001068 ORTHO05D013681 2.9e-13 78.2 59 62.7
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 1.1e-12 76.3 73 49.3
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 1.4e-12 75.9 73 46.6
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 3.2e-12 74.7 69 49.3
BcaB02g06788 Brassica carinata HOM05D001068 ORTHO05D002190 7.2e-12 73.6 70 54.3
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 1.2e-11 72.8 73 46.6
A10p05030 Brassica napus HOM05D001068 ORTHO05D013681 7.9e-11 70.1 65 52.3
Dinv19990 Davidia involucrata HOM05D001068 ORTHO05D002190 3.0e-10 68.2 65 58.5
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 4.3e-09 64.3 72 44.4
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 5.7e-09 63.9 49 61.2
BcaC05g24280 Brassica carinata HOM05D001068 ORTHO05D002190 1.7e-08 62.4 55 60.0
RcHm_v2.0_Chr6g0266301 Rosa chinensis HOM05D001068 ORTHO05D013681 8.2e-08 60.1 49 61.2
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 6.9e-07 57.0 45 62.2
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 7.7e-06 53.5 44 59.1


User provided reference genes

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