Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 1.4e-168 596.3 312 100.0
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 2.7e-124 449.1 289 85.5
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.5e-69 267.3 295 54.6
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 7.3e-69 265.0 290 55.9
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.5e-66 257.3 298 54.0
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.9e-65 253.1 293 53.2
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 8.3e-65 251.5 291 52.9
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.2e-63 247.7 291 52.2
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.2e-63 247.7 289 52.9
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 6.0e-63 245.4 289 53.3
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.0e-62 242.3 289 50.2
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 6.6e-62 241.9 295 50.8
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.1e-61 241.1 290 51.4
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 4.3e-61 239.2 312 52.2
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 5.6e-61 238.8 291 50.5
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.6e-60 237.3 299 48.8
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 2.8e-60 236.5 301 50.8
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.6e-60 236.1 300 48.3
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.7e-60 235.7 304 50.7
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 8.1e-60 235.0 302 47.7
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.1e-59 234.6 300 48.7
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.8e-59 233.8 296 51.4
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 1.8e-59 233.8 304 50.3
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 2.3e-59 233.4 289 47.4
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 2.3e-59 233.4 297 49.2
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.3e-59 233.4 297 49.2
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.1e-59 233.0 297 48.8
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.2e-58 231.1 290 49.3
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 2.0e-58 230.3 299 50.2
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.0e-58 230.3 295 48.8
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 2.0e-58 230.3 293 50.2
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 3.4e-58 229.6 295 48.8
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.4e-58 229.2 295 48.5
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 4.4e-58 229.2 297 48.5
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 9.8e-58 228.0 295 48.1
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.8e-58 228.0 295 47.8
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.2e-57 226.9 307 48.5
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 3.7e-57 226.1 291 48.1
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 4.9e-57 225.7 305 49.2
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 4.9e-57 225.7 301 48.2
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.4e-56 224.2 301 47.5
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.9e-56 223.8 295 47.5
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 2.4e-56 223.4 304 47.4
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.6e-55 220.7 298 48.7
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.6e-55 220.7 292 49.3
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.0e-54 216.5 297 48.1
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 3.0e-54 216.5 306 45.8
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 3.0e-54 216.5 306 45.8
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.9e-54 216.1 297 48.1
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 6.6e-54 215.3 305 44.9
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 2.5e-53 213.4 292 49.0
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.5e-53 213.4 297 45.5
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 2.1e-52 210.3 299 44.1
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.1e-51 208.0 294 46.9
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.8e-51 207.2 298 45.3
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 1.8e-51 207.2 294 46.3
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 6.8e-51 205.3 302 44.0
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.6e-50 203.4 293 47.1
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 5.8e-50 202.2 299 46.8
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 7.6e-50 201.8 290 45.9
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.9e-50 201.4 311 43.7
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 1.3e-49 201.1 298 41.9
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.9e-49 199.9 291 46.0
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.4e-49 198.7 295 43.7
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.9e-48 197.2 294 44.6
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.9e-48 197.2 295 43.4
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 2.4e-48 196.8 292 44.9
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 2.1e-47 193.7 256 50.4
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 2.1e-47 193.7 298 41.3
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.0e-46 191.4 300 44.3
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.3e-46 191.0 291 41.9
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.5e-45 187.6 290 43.1
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-45 187.2 295 42.7
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-45 186.8 302 43.7
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-44 184.1 300 44.3
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.1e-43 181.4 304 42.1
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.8e-43 180.6 303 40.9
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 1.8e-43 180.6 292 44.5
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-43 180.6 291 40.9
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 2.4e-43 180.3 303 40.9
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 3.1e-43 179.9 280 45.7
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 5.2e-43 179.1 296 43.6
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 8.9e-43 178.3 310 39.4
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.2e-42 177.9 309 43.4
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 2.2e-41 173.7 309 39.5
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.9e-41 173.3 310 39.7
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 3.8e-41 172.9 298 41.9
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 6.4e-41 172.2 246 44.3
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 8.4e-41 171.8 288 43.1
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.4e-40 171.0 303 39.6
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.4e-40 171.0 303 39.6
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.4e-40 169.1 297 42.8
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 9.3e-40 168.3 308 39.9
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.7e-39 166.8 291 40.9
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.7e-39 166.8 291 40.9
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 3.5e-39 166.4 309 39.5
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 3.5e-39 166.4 315 38.4
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 4.6e-39 166.0 172 55.2
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.0e-38 163.3 180 53.9
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 6.6e-38 162.2 295 41.0
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.5e-37 161.0 171 53.2
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-37 161.0 297 42.1
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-37 161.0 299 42.5
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.3e-37 159.8 205 46.3
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.3e-37 159.5 303 41.9
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 9.6e-37 158.3 183 51.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-36 157.1 308 38.6
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 4.8e-36 156.0 292 40.4
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-34 151.0 297 41.1
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 5.8e-34 149.1 299 40.8
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.9e-33 146.0 291 39.9
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.4e-33 145.2 130 56.9
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.2e-31 141.4 314 35.7
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.1e-31 140.6 300 34.7
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.7e-31 140.2 127 56.7
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 2.7e-31 140.2 298 35.2
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-30 138.3 301 38.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.7e-30 135.6 298 36.6
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 8.7e-30 135.2 302 36.8
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.6e-28 131.0 130 51.5
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.8e-28 130.2 311 34.4
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 1.8e-27 127.5 173 50.3
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 6.9e-27 125.6 294 34.4
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 2.9e-25 120.2 118 51.7
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-22 111.7 189 40.2
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-22 110.9 132 44.7
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 8.7e-22 108.6 132 43.2
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.6e-21 105.9 289 33.9
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.6e-21 105.1 187 38.5
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.8e-20 103.6 120 45.0
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.1e-19 101.7 80 65.0
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.0e-18 97.4 109 52.3
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.7e-17 94.4 79 62.0
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.2e-17 94.0 294 31.3
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.9e-14 83.2 250 33.6
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.3e-12 78.2 129 45.0
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-09 68.6 75 48.0
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.3e-09 68.2 73 47.9
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-08 63.2 131 33.6
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.6e-07 60.1 75 45.3


User provided reference genes

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