Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 5.2e-63 244.2 121 100.0
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.5e-57 225.3 121 90.9
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 4.5e-43 177.9 117 69.2
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 7.7e-43 177.2 114 71.1
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.5e-41 172.2 116 65.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.2e-41 171.4 116 65.5
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.2e-41 171.4 116 65.5
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 5.5e-41 171.0 117 68.4
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 9.5e-41 170.2 120 68.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.8e-40 168.7 117 66.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.0e-39 166.8 117 63.2
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.3e-39 165.6 114 64.9
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.3e-39 165.6 117 62.4
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.0e-39 165.2 117 67.5
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.2e-39 164.5 117 67.5
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 6.8e-39 164.1 117 65.8
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.2e-38 163.3 117 65.8
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.2e-38 163.3 114 67.5
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.2e-38 163.3 114 67.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.5e-38 162.9 117 64.1
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.0e-38 162.5 117 64.1
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-38 162.5 117 64.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.0e-38 162.5 117 64.1
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.0e-38 162.5 117 63.2
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.7e-38 161.0 112 67.0
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 7.5e-38 160.6 115 62.6
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.3e-37 159.8 112 66.1
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.3e-37 159.8 117 63.2
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.7e-37 159.5 115 64.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.7e-37 159.5 117 62.4
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-37 158.7 115 63.5
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-37 158.7 115 63.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-37 158.7 115 63.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-37 158.7 115 63.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 4.9e-37 157.9 114 62.3
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 4.9e-37 157.9 117 62.4
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.9e-37 157.9 119 63.9
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 6.3e-37 157.5 117 66.7
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 8.3e-37 157.1 120 58.3
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 8.3e-37 157.1 117 67.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 8.3e-37 157.1 116 59.5
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-36 156.8 117 65.0
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.4e-36 156.4 117 59.8
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.4e-36 155.6 116 65.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.4e-36 155.6 111 64.0
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.4e-36 155.6 116 63.8
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.1e-36 155.2 117 62.4
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.1e-36 155.2 114 64.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 4.1e-36 154.8 114 63.2
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.1e-36 154.8 114 64.0
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.4e-36 154.5 114 62.3
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 9.2e-36 153.7 117 64.1
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.2e-35 153.3 114 61.4
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.2e-35 153.3 114 61.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 4.5e-35 151.4 112 64.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 5.9e-35 151.0 110 61.8
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.0e-34 150.2 110 61.8
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.0e-34 150.2 110 61.8
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-34 149.8 110 64.5
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.7e-34 149.4 117 58.1
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-34 149.1 137 53.3
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.3e-34 149.1 121 53.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.9e-34 148.7 110 60.9
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 5.0e-34 147.9 115 60.9
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 6.6e-34 147.5 114 58.8
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.5e-33 146.4 137 53.3
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.9e-33 146.0 117 60.7
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.9e-33 146.0 108 61.1
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.5e-33 145.6 110 60.0
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.5e-33 145.6 110 60.0
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 3.3e-33 145.2 110 59.1
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.3e-33 145.2 114 64.0
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 7.3e-33 144.1 106 61.3
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.2e-32 143.3 114 55.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.1e-32 142.5 110 58.2
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.1e-32 142.5 110 58.2
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 4.7e-32 141.4 110 58.2
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 6.1e-32 141.0 110 58.2
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 6.1e-32 141.0 119 56.3
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 8.0e-32 140.6 109 60.6
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 8.0e-32 140.6 116 54.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.0e-31 138.7 114 55.3
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 4.0e-31 138.3 117 55.6
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.8e-31 137.5 114 56.1
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.8e-31 137.5 114 56.1
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 8.9e-31 137.1 112 55.4
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.5e-30 136.3 116 56.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.5e-30 136.3 111 55.9
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.5e-30 136.3 106 56.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 2.0e-30 136.0 116 56.9
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.0e-30 136.0 106 57.5
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 3.4e-30 135.2 114 53.5
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 3.4e-30 135.2 114 54.4
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 7.5e-30 134.0 114 56.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 9.8e-30 133.7 106 54.7
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-29 133.3 114 55.3
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.3e-29 133.3 121 49.6
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 2.2e-29 132.5 110 56.4
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.2e-29 132.5 117 59.8
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.9e-29 132.1 116 54.3
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.9e-29 132.1 99 62.6
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.9e-29 132.1 115 55.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.9e-29 131.3 96 63.5
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 8.3e-29 130.6 122 50.8
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.3e-29 130.6 120 54.2
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 8.3e-29 130.6 103 56.3
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 8.3e-29 130.6 103 56.3
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.1e-28 130.2 114 53.5
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.4e-28 129.0 116 53.4
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 5.4e-28 127.9 124 54.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.6e-27 126.3 118 54.2
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.6e-27 126.3 117 53.0
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.6e-27 124.8 96 62.5
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-26 123.6 93 62.4
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 3.0e-26 122.1 114 55.3
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 2.5e-25 119.0 116 52.6
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 3.2e-20 102.1 54 85.2
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 2.7e-19 99.0 63 81.0
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.3e-17 91.7 100 48.0
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.9e-15 84.0 93 50.5
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 3.7e-13 78.6 90 47.8
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.2e-12 75.5 80 51.2
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 6.0e-11 71.2 100 41.0
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.6e-10 67.8 50 58.0
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.6e-10 67.4 64 53.1
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 9.5e-09 63.9 58 50.0
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.7e-08 61.6 47 53.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 4.7e-08 61.6 47 55.3
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.1e-07 58.9 47 57.4
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 6.8e-07 57.8 106 35.8
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 8.9e-07 57.4 54 38.9
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 1.5e-06 56.6 34 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 5.8e-06 54.7 83 39.8


User provided reference genes

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