Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23240 Coffea canephora HOM05D004351 ORTHO05D005196 7.5e-46 186.8 93 100.0
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 9.6e-17 90.1 70 65.7
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.2e-16 89.7 70 64.3
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 1.2e-16 89.7 66 66.7
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 3.6e-16 88.2 68 66.2
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 8.1e-16 87.0 58 75.9
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 1.1e-15 86.7 60 76.7
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.4e-15 86.3 58 74.1
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 1.8e-15 85.9 58 74.1
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 5.2e-15 84.3 58 72.4
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 5.2e-15 84.3 58 70.7
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 6.8e-15 84.0 58 70.7
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 8.9e-15 83.6 58 70.7
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 8.9e-15 83.6 58 70.7
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 1.2e-14 83.2 58 70.7
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 1.2e-14 83.2 58 67.2
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 1.5e-14 82.8 61 70.5
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 2.0e-14 82.4 58 69.0
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.6e-14 82.0 58 70.7
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.4e-14 81.6 58 69.0
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.4e-14 81.6 58 69.0
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 3.4e-14 81.6 58 69.0
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 3.4e-14 81.6 58 70.7
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 3.4e-14 81.6 57 71.9
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 3.4e-14 81.6 57 68.4
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 4.4e-14 81.3 61 65.6
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 5.8e-14 80.9 60 73.3
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 5.8e-14 80.9 80 53.8
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 7.6e-14 80.5 58 67.2
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 7.6e-14 80.5 58 67.2
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 9.9e-14 80.1 56 71.4
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 9.9e-14 80.1 58 65.5
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.3e-13 79.7 58 69.0
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 1.3e-13 79.7 58 67.2
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.3e-13 79.7 58 67.2
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 1.3e-13 79.7 60 68.3
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.3e-13 79.7 58 65.5
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 1.3e-13 79.7 58 69.0
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 1.7e-13 79.3 57 68.4
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 1.7e-13 79.3 57 68.4
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 1.7e-13 79.3 58 67.2
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.7e-13 79.3 57 66.7
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 1.7e-13 79.3 57 68.4
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 2.2e-13 79.0 58 65.5
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 2.9e-13 78.6 66 62.1
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 2.9e-13 78.6 57 68.4
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 2.9e-13 78.6 58 65.5
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 3.8e-13 78.2 58 67.2
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 3.8e-13 78.2 58 63.8
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 4.9e-13 77.8 58 67.2
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 6.4e-13 77.4 58 67.2
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 6.4e-13 77.4 58 67.2
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 8.4e-13 77.0 57 68.4
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 8.4e-13 77.0 58 65.5
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 8.4e-13 77.0 58 65.5
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 1.1e-12 76.6 58 63.8
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 1.1e-12 76.6 58 63.8
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.1e-12 76.6 58 67.2
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.1e-12 76.6 73 63.0
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 62.1
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.4e-12 76.3 57 66.7
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 65.5
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 67.2
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 67.2
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 67.2
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 65.5
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 1.4e-12 76.3 58 67.2
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 1.9e-12 75.9 58 63.8
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 1.9e-12 75.9 68 55.9
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 1.9e-12 75.9 57 64.9
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 1.9e-12 75.9 58 63.8
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 2.4e-12 75.5 58 65.5
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 2.4e-12 75.5 58 67.2
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 65.5
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 62.1
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 62.1
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 60.3
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 65.5
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 67.2
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 62.1
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 3.2e-12 75.1 58 62.1
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 4.2e-12 74.7 58 65.5
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 4.2e-12 74.7 57 63.2
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 4.2e-12 74.7 58 65.5
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 4.2e-12 74.7 58 65.5
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 5.4e-12 74.3 58 63.8
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 5.4e-12 74.3 58 65.5
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 5.4e-12 74.3 58 62.1
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 60.3
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 60.3
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 63.8
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 60.3
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 60.3
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 62.1
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 7.1e-12 73.9 58 65.5
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 7.1e-12 73.9 57 66.7
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 9.3e-12 73.6 58 60.3
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 9.3e-12 73.6 59 66.1
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 9.3e-12 73.6 58 62.1
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 9.3e-12 73.6 58 63.8
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 1.2e-11 73.2 58 63.8
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 1.6e-11 72.8 58 65.5
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.6e-11 72.8 58 60.3
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.1e-11 72.4 40 82.5
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 2.1e-11 72.4 58 62.1
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 2.1e-11 72.4 58 62.1
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 2.7e-11 72.0 58 62.1
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 2.7e-11 72.0 74 50.0
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 2.7e-11 72.0 58 60.3
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 3.5e-11 71.6 56 62.5
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 6.0e-11 70.9 58 60.3
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 6.0e-11 70.9 58 60.3
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 7.8e-11 70.5 58 60.3
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 1.3e-10 69.7 58 58.6
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.3e-10 69.7 58 58.6
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.3e-10 69.7 58 58.6
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 5.1e-10 67.8 58 58.6
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 5.1e-10 67.8 58 58.6
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 1.1e-09 66.6 58 60.3
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 1.1e-09 66.6 34 88.2
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 7.3e-09 63.9 58 60.3
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 2.8e-08 62.0 40 72.5
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 8.1e-08 60.5 32 81.2
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 3.1e-07 58.5 57 52.6
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 7.6e-06 53.9 59 52.5


User provided reference genes

Program Settings