Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 4.2e-87 324.7 170 100.0
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-73 280.0 173 90.2
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 5.2e-69 264.6 173 86.1
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-61 239.6 163 81.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 8.3e-59 230.7 160 78.8
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 6.0e-41 171.4 162 56.2
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 3.9e-40 168.7 183 48.6
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 7.3e-39 164.5 129 72.9
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.6e-38 162.2 163 54.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 2.3e-37 159.5 163 53.4
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 3.1e-37 159.1 163 52.1
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.2e-37 158.3 159 51.6
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.2e-37 158.3 159 51.6
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 6.8e-37 157.9 170 50.6
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 8.9e-37 157.5 163 51.5
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 2.0e-36 156.4 163 50.9
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 3.4e-36 155.6 159 53.5
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 3.4e-36 155.6 163 50.9
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 4.4e-36 155.2 163 50.9
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 1.3e-35 153.7 159 50.9
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 1.7e-35 153.3 161 51.6
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 2.9e-35 152.5 165 52.1
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 4.9e-35 151.8 166 49.4
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 6.4e-35 151.4 161 51.6
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 3.2e-34 149.1 159 52.2
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 4.1e-34 148.7 161 50.3
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 4.1e-34 148.7 159 48.4
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 5.4e-34 148.3 163 49.1
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 7.1e-34 147.9 163 47.9
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 9.2e-34 147.5 162 47.5
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 1.2e-33 147.1 159 49.7
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 1.6e-33 146.7 163 49.1
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 1.6e-33 146.7 159 51.6
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 2.1e-33 146.4 163 50.3
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 2.1e-33 146.4 159 50.9
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 2.7e-33 146.0 161 49.7
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 7.8e-33 144.4 159 50.9
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 7.8e-33 144.4 163 48.5
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 1.0e-32 144.1 159 47.8
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 1.3e-32 143.7 159 50.3
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 1.3e-32 143.7 159 49.1
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 1.7e-32 143.3 167 46.1
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 2.3e-32 142.9 163 47.9
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 2.3e-32 142.9 163 49.1
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 2.3e-32 142.9 161 50.9
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 3.0e-32 142.5 163 46.6
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 3.9e-32 142.1 163 48.5
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 5.1e-32 141.7 163 50.9
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 8.6e-32 141.0 162 50.0
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 1.1e-31 140.6 161 50.3
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 1.1e-31 140.6 163 47.9
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 1.9e-31 139.8 163 47.2
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 1.9e-31 139.8 163 47.9
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 4.3e-31 138.7 163 45.4
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 4.3e-31 138.7 163 48.5
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 4.3e-31 138.7 163 47.2
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 7.3e-31 137.9 163 46.6
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 7.3e-31 137.9 160 47.5
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 7.3e-31 137.9 152 49.3
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 9.5e-31 137.5 159 48.4
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 9.5e-31 137.5 163 49.1
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 1.2e-30 137.1 163 47.2
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 1.6e-30 136.7 163 47.2
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 2.1e-30 136.3 163 46.0
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 2.8e-30 136.0 163 47.2
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 3.6e-30 135.6 162 48.8
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.6e-30 135.6 162 48.8
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 3.6e-30 135.6 163 46.0
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 4.7e-30 135.2 162 43.2
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 4.7e-30 135.2 155 47.7
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 6.2e-30 134.8 163 44.8
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 6.2e-30 134.8 158 49.4
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 1.1e-29 134.0 163 47.2
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.4e-29 133.7 162 48.1
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 1.8e-29 133.3 163 44.8
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 1.8e-29 133.3 163 44.8
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 1.8e-29 133.3 163 44.8
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.8e-29 133.3 162 48.8
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.8e-29 133.3 162 48.8
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 3.1e-29 132.5 162 45.1
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 3.1e-29 132.5 163 45.4
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 4.0e-29 132.1 163 44.8
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 5.2e-29 131.7 162 48.1
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 5.2e-29 131.7 162 45.7
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 5.2e-29 131.7 163 44.8
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 5.2e-29 131.7 163 46.6
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 6.8e-29 131.3 163 44.2
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 6.8e-29 131.3 160 45.6
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 1.5e-28 130.2 159 44.7
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 2.0e-28 129.8 160 45.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 2.0e-28 129.8 159 47.8
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-28 129.4 163 47.9
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 4.4e-28 128.6 163 43.6
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 4.4e-28 128.6 163 45.4
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 5.8e-28 128.3 164 43.9
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 5.8e-28 128.3 163 44.8
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 5.8e-28 128.3 162 46.9
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 1.3e-27 127.1 163 44.8
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 1.7e-27 126.7 158 48.1
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 1.7e-27 126.7 158 48.1
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 2.2e-27 126.3 172 44.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 6.4e-27 124.8 159 44.7
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.1e-26 124.0 159 40.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 2.4e-26 122.9 144 47.2
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 3.2e-26 122.5 159 44.0
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 4.1e-26 122.1 162 43.2
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 5.4e-26 121.7 81 86.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 2.1e-25 119.8 167 40.1
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.6e-23 111.7 161 41.6
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.6e-20 102.8 163 37.4
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.6e-20 102.8 163 37.4
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 7.6e-20 101.3 230 34.8
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 1.1e-18 97.4 161 38.5
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 9.0e-13 77.8 54 68.5
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 3.4e-12 75.9 54 63.0
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.7e-11 73.6 48 68.8
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-10 70.5 154 34.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 1.4e-10 70.5 159 31.4
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.9e-10 70.1 170 32.9
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.2e-10 69.3 56 64.3
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 9.3e-10 67.8 165 28.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.1e-07 60.8 97 37.1
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.5e-07 60.5 160 29.4


User provided reference genes

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