Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21230 Coffea canephora HOM05D000144 ORTHO05D034800 8.2e-39 163.3 86 100.0
Cc07_g07080 Coffea canephora HOM05D000144 ORTHO05D008375 7.7e-37 156.8 86 96.5
Cc00_g20530 Coffea canephora HOM05D000144 ORTHO05D034800 1.0e-36 156.4 86 96.5
Cc08_g03760 Coffea canephora HOM05D000144 ORTHO05D034800 7.2e-35 150.2 86 93.0
CiPaw.01G004600 Carya illinoinensis HOM05D000144 ORTHO05D008375 1.6e-21 105.9 77 71.4
Hma1.2p1_0852F.1_g228500 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 2.0e-21 105.5 86 61.6
Hma1.2p1_0852F.1_g228510 Hydrangea macrophylla HOM05D000144 ORTHO05D008375 2.0e-21 105.5 86 61.6
TAR381G1287 Trochodendron aralioides HOM05D000144 ORTHO05D008375 5.9e-21 104.0 90 65.6
PGSC0003DMG400021445 Solanum tuberosum HOM05D000144 ORTHO05D008375 1.0e-20 103.2 86 60.5
Sopen02g036930 Solanum pennellii HOM05D000144 ORTHO05D008375 1.3e-20 102.8 86 60.5
Solyc02g092380.4 Solanum lycopersicum HOM05D000144 ORTHO05D008375 1.7e-20 102.4 86 61.6
Oeu013322.1 Olea europaea HOM05D000144 ORTHO05D008375 2.2e-20 102.1 82 62.2
CSS0036973 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D008375 5.0e-20 100.9 74 62.2
Potri.005G148900 Populus trichocarpa HOM05D000144 ORTHO05D008375 6.5e-20 100.5 88 62.5
Manes.12G114000 Manihot esculenta HOM05D000144 ORTHO05D008375 1.1e-19 99.8 81 69.1
Oeu014248.1 Olea europaea HOM05D000144 ORTHO05D008375 1.9e-19 99.0 79 64.6
CAN.G1075.36 Capsicum annuum HOM05D000144 ORTHO05D008375 2.5e-19 98.6 86 59.3
Nitab4.5_0000142g0040 Nicotiana tabacum HOM05D000144 ORTHO05D008375 2.5e-19 98.6 86 61.6
Peaxi162Scf00548g00659 Petunia axillaris HOM05D000144 ORTHO05D008375 7.2e-19 97.1 84 59.5
Thecc.01G072500 Theobroma cacao HOM05D000144 ORTHO05D008375 7.2e-19 97.1 88 68.2
Sabra05G0118600 Salix brachista HOM05D000144 ORTHO05D008375 1.2e-18 96.3 86 61.6
Nn5g30589 Nelumbo nucifera HOM05D000144 ORTHO05D008375 2.1e-18 95.5 87 63.2
GSVIVG01000108001 Vitis vinifera HOM05D000144 ORTHO05D008375 2.1e-18 95.5 86 60.5
Actinidia36432 Actinidia chinensis HOM05D000144 ORTHO05D008375 3.6e-18 94.7 86 57.0
Cpa.g.sc6.18 Carica papaya HOM05D000144 ORTHO05D008375 3.6e-18 94.7 79 65.8
MSTRG.23672 Avicennia marina HOM05D000144 ORTHO05D008375 4.7e-18 94.4 86 59.3
Gohir.D12G075500 Gossypium hirsutum HOM05D000144 ORTHO05D008375 6.1e-18 94.0 87 62.1
Nitab4.5_0002119g0110 Nicotiana tabacum HOM05D000144 ORTHO05D008375 1.0e-17 93.2 86 58.1
Gorai.008G083600 Gossypium raimondii HOM05D000144 ORTHO05D008375 2.3e-17 92.0 84 63.1
TWI73G1111 Tripterygium wilfordii HOM05D000144 ORTHO05D008375 2.3e-17 92.0 87 63.2
Aqoxy6G02612 Aquilegia oxysepala HOM05D000144 ORTHO05D008375 4.0e-17 91.3 86 60.5
Glyma.01G194100 Glycine max HOM05D000144 ORTHO05D008375 5.2e-17 90.9 88 61.4
Glyma.11G047800 Glycine max HOM05D000144 ORTHO05D008375 5.2e-17 90.9 88 61.4
ClCG01G017550 Citrullus lanatus HOM05D000144 ORTHO05D008375 6.8e-17 90.5 86 61.6
Cfa004131 Carpinus fangiana HOM05D000144 ORTHO05D008375 8.8e-17 90.1 86 58.1
CsaV3_6G044090 Cucumis sativus L. HOM05D000144 ORTHO05D008375 3.4e-16 88.2 86 60.5
AUR62040239 Chenopodium quinoa HOM05D000144 ORTHO05D008375 5.7e-16 87.4 86 58.1
MELO3C007631.2 Cucumis melo HOM05D000144 ORTHO05D008375 5.7e-16 87.4 86 59.3
TPR.G34857 Trifolium pratense HOM05D000144 ORTHO05D008375 5.7e-16 87.4 86 58.1
VMungo1215G0773 Vigna mungo HOM05D000144 ORTHO05D008375 9.8e-16 86.7 87 57.5
Atru.chr3.1009 Acer truncatum HOM05D000144 ORTHO05D008375 1.3e-15 86.3 86 60.5
Medtr5g015500 Medicago truncatula HOM05D000144 ORTHO05D008375 1.3e-15 86.3 88 60.2
Rhsim10G0099600 Rhododendron simsii HOM05D000144 ORTHO05D008375 2.2e-15 85.5 76 60.5
HanXRQChr15g0472631 Helianthus annuus HOM05D000144 ORTHO05D008375 2.8e-15 85.1 75 61.3
Ciclev10025214m.g Citrus clementina HOM05D000144 ORTHO05D008375 4.8e-15 84.3 69 63.8
AUR62004008 Chenopodium quinoa HOM05D000144 ORTHO05D008375 6.3e-15 84.0 86 55.8
TWI09G0055 Tripterygium wilfordii HOM05D000144 ORTHO05D008375 6.3e-15 84.0 88 61.4
vmacro05409 Vaccinium macrocarpon HOM05D000144 ORTHO05D008375 6.3e-15 84.0 97 49.5
SGA_v2.0_scaffold15G07454 Striga asiatica HOM05D000144 ORTHO05D008375 1.1e-14 83.2 86 54.7
Ca_24694_v3 Cicer arietinum L. HOM05D000144 ORTHO05D008375 3.1e-14 81.6 86 59.3
EL10Ac6g15620 Beta vulgaris HOM05D000144 ORTHO05D008375 5.4e-14 80.9 74 59.5
Actinidia11983 Actinidia chinensis HOM05D000144 ORTHO05D008375 7.0e-14 80.5 68 60.3
Lalb_Chr16g0378861 Lupinus albus HOM05D000144 ORTHO05D008375 7.0e-14 80.5 87 52.9
Phvul.002G010800 Phaseolus vulgaris HOM05D000144 ORTHO05D008375 7.0e-14 80.5 88 56.8
Psat2g171520 Pisum sativum HOM05D000144 ORTHO05D008375 7.0e-14 80.5 89 57.3
arahy.Tifrunner.gnm1.ann1.L6JH5D Arachis hypogaea HOM05D000144 ORTHO05D008375 1.6e-13 79.3 77 62.3
arahy.Tifrunner.gnm1.ann1.ZP9CR3 Arachis hypogaea HOM05D000144 ORTHO05D008375 2.0e-13 79.0 77 62.3
Lj2g0027160 Lotus japonicus HOM05D000144 ORTHO05D008375 2.7e-13 78.6 93 52.7
PGR004G0927 Punica granatum HOM05D000144 ORTHO05D008375 4.5e-13 77.8 86 53.5
Sc16g0002880 Simmondsia chinensis HOM05D000144 ORTHO05D008375 1.0e-12 76.6 87 52.9
MD15G1307700 Malus domestica HOM05D000144 ORTHO05D008375 1.3e-12 76.3 72 58.3
SalBow3G3765 Salvia bowleyana HOM05D000144 ORTHO05D008375 1.7e-12 75.9 87 52.9
Haze_15284 Corylus avellana HOM05D000144 ORTHO05D008375 5.0e-12 74.3 93 51.6
PSO541G5893 Papaver somniferum HOM05D000144 ORTHO05D008375 6.6e-12 73.9 90 54.4
CDE07G1536 Ceratophyllum demersum HOM05D000144 ORTHO05D008375 8.6e-12 73.6 86 52.3
Hund16400 Selenicereus undatus HOM05D000144 ORTHO05D008375 1.1e-11 73.2 74 60.8
Zm00001eb007780 Zea mays HOM05D000144 ORTHO05D008375 1.9e-11 72.4 74 56.8
COL.COLO4_11575 Corchorus olitorius HOM05D000144 ORTHO05D008375 2.5e-11 72.0 76 59.2
Prupe.6G220900 Prunus persica HOM05D000144 ORTHO05D008375 2.5e-11 72.0 72 61.1
PSO675G3797 Papaver somniferum HOM05D000144 ORTHO05D008375 4.2e-11 71.2 90 50.0
AL8G43770 Arabidopsis lyrata HOM05D000144 ORTHO05D008375 2.1e-10 68.9 78 52.6
ATR1153G005 Amborella trichopoda HOM05D000144 ORTHO05D008375 3.6e-10 68.2 86 45.3
FvH4_1g17680 Fragaria vesca HOM05D000144 ORTHO05D008375 4.7e-10 67.8 75 57.3
FAN19G2025 Fragaria x ananassa HOM05D000144 ORTHO05D008375 4.7e-10 67.8 75 57.3
Sp2g29120 Schrenkiella parvula HOM05D000144 ORTHO05D008375 1.0e-09 66.6 75 49.3
Thhalv10003864m.g Eutrema salsugineum HOM05D000144 ORTHO05D008375 1.4e-09 66.2 75 56.0
FAN23G2810 Fragaria x ananassa HOM05D000144 ORTHO05D008375 1.4e-09 66.2 87 51.7
AT5G67530 Arabidopsis thaliana HOM05D000144 ORTHO05D008375 1.8e-09 65.9 74 51.4
MD02G1185800 Malus domestica HOM05D000144 ORTHO05D008375 2.3e-09 65.5 69 55.1
THA.LOC104827618 Tarenaya hassleriana HOM05D000144 ORTHO05D008375 3.0e-09 65.1 71 53.5
DCAR_025800 Daucus carota HOM05D000144 ORTHO05D008375 4.0e-09 64.7 68 50.0
Aa31LG1G16080 Aethionema arabicum HOM05D000144 ORTHO05D008375 5.2e-09 64.3 71 52.1
Eucgr.I00705 Eucalyptus grandis HOM05D000144 ORTHO05D008375 5.2e-09 64.3 81 56.8
A06p32890 Brassica napus HOM05D000144 ORTHO05D008375 1.5e-08 62.8 75 53.3
C03p59580 Brassica napus HOM05D000144 ORTHO05D008375 1.5e-08 62.8 75 53.3
BolC3t18222H Brassica oleracea HOM05D000144 ORTHO05D008375 1.5e-08 62.8 75 53.3
BraA06t26220Z Brassica rapa HOM05D000144 ORTHO05D008375 1.5e-08 62.8 75 53.3
FAN26G3316 Fragaria x ananassa HOM05D000144 ORTHO05D008375 2.6e-08 62.0 87 50.6
FAN28G1584 Fragaria x ananassa HOM05D000144 ORTHO05D008375 2.6e-08 62.0 87 50.6
Gohir.A12G077300 Gossypium hirsutum HOM05D000144 ORTHO05D008375 9.8e-08 60.1 51 64.7
ECA246G5277 Erigeron canadensis HOM05D000144 ORTHO05D008375 1.7e-07 59.3 47 63.8
Migut.H00349 Erythranthe guttata HOM05D000144 ORTHO05D008375 1.7e-07 59.3 86 40.7
RcHm_v2.0_Chr2g0108011 Rosa chinensis HOM05D000144 ORTHO05D008375 2.2e-07 58.9 70 54.3
Carub.0008s2694 Capsella rubella HOM05D000144 ORTHO05D008375 8.3e-07 57.0 77 41.6
CARHR280050 Cardamine hirsuta HOM05D000144 ORTHO05D008375 1.1e-06 56.6 90 42.2
HPP92_024498 Vanilla planifolia HOM05D000144 ORTHO05D008375 1.4e-06 56.2 92 46.7
CSS0003961 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D113215 5.4e-06 54.3 44 61.4


User provided reference genes

Program Settings