Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 5.4e-80 300.8 142 100.0
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 1.8e-43 179.5 142 65.5
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 1.8e-14 83.2 47 80.9
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.8e-14 83.2 47 80.9
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.8e-14 83.2 47 80.9
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 1.8e-14 83.2 47 80.9
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 1.8e-14 83.2 47 80.9
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 1.8e-14 83.2 47 80.9
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 3.0e-14 82.4 47 80.9
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 3.0e-14 82.4 47 80.9
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 3.0e-14 82.4 58 69.0
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 4.0e-14 82.0 47 78.7
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 4.0e-14 82.0 47 78.7
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 4.0e-14 82.0 47 78.7
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 4.0e-14 82.0 47 78.7
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 4.0e-14 82.0 47 78.7
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 5.2e-14 81.6 37 97.3
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 80.9
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 80.9
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 5.2e-14 81.6 47 78.7
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 6.8e-14 81.3 37 97.3
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 6.8e-14 81.3 47 78.7
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 8.9e-14 80.9 47 78.7
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.2e-13 80.5 47 76.6
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 1.5e-13 80.1 47 76.6
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 76.6
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 74.5
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.0e-13 79.7 47 74.5
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 2.6e-13 79.3 47 74.5
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 2.6e-13 79.3 47 76.6
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.6e-13 79.3 47 76.6
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 3.4e-13 79.0 47 76.6
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 4.4e-13 78.6 36 94.4
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 5.7e-13 78.2 47 78.7
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 5.7e-13 78.2 47 74.5
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 5.7e-13 78.2 47 78.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 7.5e-13 77.8 60 60.0
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 7.5e-13 77.8 47 74.5
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 7.5e-13 77.8 47 74.5
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 7.5e-13 77.8 36 94.4
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 7.5e-13 77.8 47 72.3
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 9.8e-13 77.4 56 69.6
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.3e-12 77.0 37 94.6
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.3e-12 77.0 57 70.2
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.3e-12 77.0 47 76.6
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 72.3
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 1.7e-12 76.6 47 76.6
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 72.3
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 2.2e-12 76.3 47 76.6
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.8e-12 75.9 47 72.3
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 2.8e-12 75.9 47 72.3
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.7e-12 75.5 47 74.5
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 3.7e-12 75.5 47 74.5
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 4.9e-12 75.1 47 74.5
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 8.3e-12 74.3 48 72.9
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 4.1e-11 72.0 47 68.1
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 5.4e-11 71.6 37 75.7
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 5.4e-11 71.6 37 78.4
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 7.0e-11 71.2 37 78.4
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 7.0e-11 71.2 47 63.8
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 9.2e-11 70.9 47 63.8
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 9.2e-11 70.9 37 78.4
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.6e-10 70.1 48 70.8
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.6e-10 70.1 48 70.8
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 2.0e-10 69.7 37 73.0
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 2.0e-10 69.7 56 60.7
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.0e-10 69.7 37 73.0
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 2.0e-10 69.7 37 73.0
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.7e-10 69.3 48 70.8
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.7e-10 69.3 48 70.8
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 4.5e-10 68.6 37 73.0
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 7.8e-10 67.8 47 63.8
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 7.8e-10 67.8 37 70.3
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 1.0e-09 67.4 37 70.3
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.3e-09 66.2 48 64.6
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.9e-09 65.9 48 64.6
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.9e-09 65.9 52 57.7
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.9e-09 65.9 52 57.7
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.1e-08 63.9 48 64.6
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.1e-08 63.9 52 55.8
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 6.8e-06 54.7 31 77.4


User provided reference genes

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