Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 0.0e+00 1285.4 701 100.0
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.6e-98 364.0 736 43.9
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 8.3e-97 359.0 666 42.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 7.0e-96 355.9 751 43.5
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 6.6e-94 349.4 725 43.6
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 6.6e-94 349.4 725 43.6
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 8.6e-94 349.0 422 50.0
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 9.5e-93 345.5 690 42.5
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 1.2e-92 345.1 766 42.2
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 8.9e-91 339.0 744 42.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.0e-90 337.8 465 46.7
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 8.3e-89 332.4 424 48.8
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 3.2e-88 330.5 428 48.6
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.2e-88 330.5 697 41.3
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.5e-87 327.0 750 36.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 6.0e-87 326.2 741 42.0
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.0e-86 323.9 733 38.6
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.1e-85 322.0 747 41.9
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 6.2e-84 316.2 778 40.1
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 1.8e-83 314.7 432 46.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 3.4e-82 310.5 492 43.3
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.9e-81 306.6 664 42.9
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 2.4e-80 304.3 724 37.3
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 1.2e-79 302.0 418 45.9
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.2e-79 302.0 820 39.5
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.0e-78 297.4 478 43.9
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 8.6e-78 295.8 735 39.3
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.9e-77 294.7 715 39.9
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.2e-76 292.0 464 44.2
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.2e-76 292.0 452 44.0
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.8e-76 290.8 713 40.5
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.1e-75 287.3 748 39.8
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 3.1e-75 287.3 719 39.9
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.2e-75 286.6 842 35.9
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.2e-74 285.4 767 37.5
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.5e-74 285.0 712 38.8
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 2.6e-74 284.3 718 34.5
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 4.4e-74 283.5 701 41.9
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 7.6e-74 282.7 739 39.5
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.2e-73 281.2 737 38.1
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.1e-72 278.9 469 41.8
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.4e-72 278.5 675 42.5
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.5e-71 273.9 473 42.9
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 4.6e-71 273.5 624 43.9
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 3.9e-70 270.4 393 45.0
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 8.7e-70 269.2 711 39.7
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.9e-69 268.1 684 41.4
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.5e-69 267.7 436 42.0
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.3e-69 267.3 655 40.9
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 4.3e-69 266.9 374 47.9
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 4.8e-68 263.5 493 39.4
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 4.8e-68 263.5 444 41.9
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 4.8e-68 263.5 358 46.1
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-67 261.9 445 42.0
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.8e-67 261.5 778 38.4
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 5.3e-67 260.0 453 41.5
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.0e-66 258.1 523 40.2
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.4e-66 256.9 773 38.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.9e-65 254.2 440 41.1
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.1e-64 252.3 771 36.6
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 1.4e-64 251.9 466 40.3
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.4e-64 251.9 396 44.2
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.1e-64 249.6 778 38.0
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-63 248.8 780 37.4
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.2e-63 248.8 499 38.7
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.2e-63 248.8 389 41.9
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 2.1e-63 248.1 430 40.9
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.7e-63 247.7 739 37.5
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.7e-63 247.7 468 42.7
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 3.5e-63 247.3 372 43.5
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 4.6e-63 246.9 461 41.2
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.7e-62 245.0 442 41.6
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 6.6e-62 243.0 457 40.3
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 7.3e-61 239.6 784 35.8
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.3e-60 238.8 734 35.6
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.3e-60 238.8 511 38.9
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.6e-60 238.4 385 42.6
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.8e-60 236.9 279 50.5
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 4.8e-60 236.9 279 50.9
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 6.2e-60 236.5 286 49.0
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 8.1e-60 236.1 674 37.4
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 8.1e-60 236.1 410 43.4
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.4e-59 235.3 405 42.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 4.0e-59 233.8 465 40.0
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 9.0e-59 232.6 426 41.5
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 3.4e-58 230.7 462 39.0
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.4e-58 230.7 174 67.2
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.8e-58 229.9 639 38.2
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 9.9e-58 229.2 423 40.2
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 3.8e-57 227.3 529 37.2
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 4.9e-57 226.9 384 41.9
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 8.4e-57 226.1 439 39.6
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.2e-55 222.2 377 41.1
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.2e-55 222.2 462 39.8
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.2e-55 222.2 259 51.0
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.6e-55 221.9 215 56.3
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.6e-55 221.9 375 42.1
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.6e-55 221.9 722 36.8
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.1e-55 221.5 745 31.5
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 6.0e-55 219.9 413 40.4
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 7.9e-55 219.5 379 42.7
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.3e-54 218.8 440 40.9
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.8e-54 218.4 217 55.8
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.8e-54 218.4 217 55.8
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.0e-54 217.6 746 36.5
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 3.0e-54 217.6 370 43.0
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 3.9e-54 217.2 259 50.2
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 5.1e-54 216.9 259 50.6
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 7.4e-53 213.0 188 63.3
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.3e-52 212.2 174 64.4
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 4.8e-52 210.3 405 39.0
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 8.1e-52 209.5 615 37.6
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.1e-51 209.1 281 47.3
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 5.3e-51 206.8 310 45.2
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.2e-50 205.7 368 40.5
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.0e-50 204.9 470 36.4
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 3.4e-50 204.1 211 55.0
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 6.5e-49 199.9 445 37.3
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 3.5e-47 194.1 165 59.4
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 7.9e-47 193.0 393 36.6
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.0e-46 192.6 160 62.5
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 3.0e-46 191.0 637 35.9
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 3.9e-46 190.7 480 35.8
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.3e-45 187.2 193 49.2
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 6.3e-44 183.3 212 50.0
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.1e-43 182.6 328 37.8
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-43 182.2 503 33.8
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.4e-43 181.4 393 37.4
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.0e-41 176.0 445 33.3
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 2.9e-41 174.5 504 33.1
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 2.1e-39 168.3 257 38.5
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.6e-36 158.7 213 43.2
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 4.8e-36 157.1 219 42.9
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.3e-33 149.1 189 45.5
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.9e-33 147.9 134 53.7
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.4e-32 145.6 176 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 5.5e-32 143.7 283 37.8
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 7.9e-31 139.8 159 45.9
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 7.9e-31 139.8 218 37.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.2e-28 131.7 468 30.1
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 5.0e-25 120.6 124 57.3
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 2.5e-24 118.2 124 57.3
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.2e-17 95.1 96 54.2
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 7.2e-16 90.1 71 60.6
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.3e-14 85.1 138 34.1
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 4.4e-13 80.9 90 51.1
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 7.5e-13 80.1 285 31.9
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 8.2e-12 76.6 213 28.6
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.1e-08 66.2 98 40.8
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 7.2e-08 63.5 101 39.6


User provided reference genes

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