Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 1.4e-30 135.6 66 100.0
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 7.7e-29 129.8 66 95.5
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 1.1e-19 99.4 50 94.0
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.5e-16 89.0 49 81.6
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 5.7e-16 87.0 59 67.8
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 9.8e-16 86.3 49 79.6
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 1.7e-15 85.5 51 72.5
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 2.2e-15 85.1 50 76.0
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 3.7e-15 84.3 59 67.8
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 4.9e-15 84.0 50 74.0
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 4.9e-15 84.0 49 75.5
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.9e-15 84.0 49 75.5
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.9e-15 84.0 49 75.5
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 8.3e-15 83.2 50 74.0
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 8.3e-15 83.2 50 72.0
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 8.3e-15 83.2 59 67.8
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 8.3e-15 83.2 48 79.2
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 1.1e-14 82.8 50 76.0
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 1.1e-14 82.8 50 76.0
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 1.1e-14 82.8 49 73.5
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 1.4e-14 82.4 50 70.0
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.8e-14 82.0 50 70.0
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 2.4e-14 81.6 50 72.0
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.4e-14 81.6 50 72.0
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 3.1e-14 81.3 50 70.0
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 3.1e-14 81.3 48 77.1
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 4.1e-14 80.9 66 59.1
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 5.4e-14 80.5 51 68.6
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 7.0e-14 80.1 51 72.5
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 9.2e-14 79.7 48 72.9
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 9.2e-14 79.7 48 72.9
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 9.2e-14 79.7 49 71.4
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 9.2e-14 79.7 50 70.0
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 9.2e-14 79.7 50 72.0
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 1.2e-13 79.3 49 73.5
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 1.2e-13 79.3 48 77.1
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 1.2e-13 79.3 50 74.0
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.2e-13 79.3 50 70.0
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.6e-13 79.0 50 68.0
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.6e-13 79.0 51 70.6
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.6e-13 79.0 59 66.1
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 2.0e-13 78.6 48 72.9
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 2.7e-13 78.2 59 64.4
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.5e-13 77.8 47 72.3
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 3.5e-13 77.8 48 77.1
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 4.5e-13 77.4 47 74.5
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 4.5e-13 77.4 54 68.5
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 5.9e-13 77.0 50 66.0
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 5.9e-13 77.0 49 71.4
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 5.9e-13 77.0 50 70.0
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 5.9e-13 77.0 51 72.5
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 7.8e-13 76.6 48 72.9
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 7.8e-13 76.6 48 72.9
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.0e-12 76.3 48 70.8
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.3e-12 75.9 59 66.1
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.7e-12 75.5 48 72.9
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.7e-12 75.5 48 72.9
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.7e-12 75.5 46 76.1
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.7e-12 75.5 46 76.1
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.7e-12 75.5 46 76.1
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 2.3e-12 75.1 48 72.9
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.3e-12 75.1 51 68.6
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 2.9e-12 74.7 59 61.0
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.9e-12 74.7 50 70.0
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.9e-12 74.7 47 72.3
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 2.9e-12 74.7 50 66.0
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 3.9e-12 74.3 47 76.6
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 3.9e-12 74.3 48 70.8
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 3.9e-12 74.3 49 67.3
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 3.9e-12 74.3 48 70.8
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 5.0e-12 73.9 48 68.8
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 6.6e-12 73.6 46 67.4
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 6.6e-12 73.6 48 68.8
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 6.6e-12 73.6 48 70.8
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 6.6e-12 73.6 48 68.8
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 8.6e-12 73.2 48 66.7
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 8.6e-12 73.2 48 66.7
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.1e-11 72.8 47 74.5
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 1.5e-11 72.4 48 66.7
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.5e-11 72.4 48 66.7
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.5e-11 72.4 48 68.8
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.9e-11 72.0 59 62.7
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 1.9e-11 72.0 48 66.7
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 2.5e-11 71.6 48 66.7
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 2.5e-11 71.6 48 66.7
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 2.5e-11 71.6 48 68.8
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 2.5e-11 71.6 48 68.8
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 2.5e-11 71.6 48 66.7
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 4.3e-11 70.9 50 64.0
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 5.6e-11 70.5 48 68.8
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 5.6e-11 70.5 48 68.8
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 5.6e-11 70.5 48 68.8
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 5.6e-11 70.5 48 66.7
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 7.3e-11 70.1 47 68.1
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 9.5e-11 69.7 48 64.6
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-10 69.3 48 64.6
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 1.2e-10 69.3 48 64.6
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 2.1e-10 68.6 48 66.7
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 2.1e-10 68.6 48 66.7
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 2.1e-10 68.6 50 64.0
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 2.8e-10 68.2 48 66.7
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 3.6e-10 67.8 47 66.0
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 6.1e-10 67.0 46 63.0
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 8.0e-10 66.6 48 64.6
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 8.0e-10 66.6 45 66.7
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 1.4e-09 65.9 43 72.1
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 4.0e-09 64.3 50 54.0
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 5.2e-09 63.9 50 56.0
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 6.8e-09 63.5 44 65.9
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 1.5e-08 62.4 47 55.3
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 4.9e-07 57.4 37 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 8.3e-07 56.6 46 54.3


User provided reference genes

Program Settings