Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g16450 Coffea canephora HOM05D003677 ORTHO05D004231 7.2e-56 220.3 110 100.0
Cc02_g08860 Coffea canephora HOM05D003677 ORTHO05D004231 8.1e-23 110.5 57 91.2
Manes.09G148000 Manihot esculenta HOM05D003677 ORTHO05D004231 4.0e-22 108.2 53 94.3
Sabra13G0042900 Salix brachista HOM05D003677 ORTHO05D004231 4.0e-22 108.2 59 84.7
COL.COLO4_15475 Corchorus olitorius HOM05D003677 ORTHO05D004231 1.2e-21 106.7 52 94.2
DCAR_009653 Daucus carota HOM05D003677 ORTHO05D004231 1.2e-21 106.7 57 87.7
FvH4_6g01880 Fragaria vesca HOM05D003677 ORTHO05D004231 1.2e-21 106.7 53 92.5
ECA238G1929 Erigeron canadensis HOM05D003677 ORTHO05D004231 1.5e-21 106.3 57 86.0
MD04G1229900 Malus domestica HOM05D003677 ORTHO05D004231 1.5e-21 106.3 52 94.2
MD12G1247300 Malus domestica HOM05D003677 ORTHO05D004231 1.5e-21 106.3 52 94.2
RcHm_v2.0_Chr3g0449621 Rosa chinensis HOM05D003677 ORTHO05D004231 1.5e-21 106.3 52 94.2
TWI81G0231 Tripterygium wilfordii HOM05D003677 ORTHO05D004231 1.5e-21 106.3 52 94.2
QL03p030537 Quercus lobata HOM05D003677 ORTHO05D004231 2.0e-21 105.9 57 86.0
Atru.chr2.953 Acer truncatum HOM05D003677 ORTHO05D004231 2.6e-21 105.5 52 92.3
Atru.chr2.976 Acer truncatum HOM05D003677 ORTHO05D004231 2.6e-21 105.5 52 92.3
Eucgr.H04231 Eucalyptus grandis HOM05D003677 ORTHO05D004231 2.6e-21 105.5 57 86.0
MSTRG.24694 Avicennia marina HOM05D003677 ORTHO05D004231 3.4e-21 105.1 52 92.3
ClCG11G010570 Citrullus lanatus HOM05D003677 ORTHO05D004231 3.4e-21 105.1 52 92.3
CsaV3_2G009740 Cucumis sativus L. HOM05D003677 ORTHO05D004231 3.4e-21 105.1 52 92.3
MD12G1247000 Malus domestica HOM05D003677 ORTHO05D004231 3.4e-21 105.1 53 90.6
Nn1g02804 Nelumbo nucifera HOM05D003677 ORTHO05D004231 3.4e-21 105.1 57 86.0
Prupe.6G350000 Prunus persica HOM05D003677 ORTHO05D004231 3.4e-21 105.1 52 92.3
ClCG06G009560 Citrullus lanatus HOM05D003677 ORTHO05D004231 4.4e-21 104.8 52 92.3
Lsat_1_v5_gn_2_16040 Lactuca sativa HOM05D003677 ORTHO05D004231 4.4e-21 104.8 52 92.3
GSVIVG01016104001 Vitis vinifera HOM05D003677 ORTHO05D004231 4.4e-21 104.8 52 92.3
AUR62004836 Chenopodium quinoa HOM05D003677 ORTHO05D004231 5.8e-21 104.4 57 84.2
AUR62040925 Chenopodium quinoa HOM05D003677 ORTHO05D004231 5.8e-21 104.4 57 84.2
Duzib106G0879 Durio zibethinus HOM05D003677 ORTHO05D004231 5.8e-21 104.4 57 84.2
Lj4g0016038 Lotus japonicus HOM05D003677 ORTHO05D004231 5.8e-21 104.4 60 83.3
PGR004G1803 Punica granatum HOM05D003677 ORTHO05D004231 5.8e-21 104.4 57 84.2
Cfa006347 Carpinus fangiana HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
CiPaw.02G020400 Carya illinoinensis HOM05D003677 ORTHO05D004231 7.6e-21 104.0 57 84.2
Ciclev10021882m.g Citrus clementina HOM05D003677 ORTHO05D004231 7.6e-21 104.0 57 84.2
FAN05G1443 Fragaria x ananassa HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
FAN05G3813 Fragaria x ananassa HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Gohir.A11G247500 Gossypium hirsutum HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Gohir.A13G167400 Gossypium hirsutum HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Gohir.D13G172900 Gossypium hirsutum HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Hma1.2p1_1512F.1_g287960 Hydrangea macrophylla HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Sed0020318 Sechium edule HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Sc20g0000650 Simmondsia chinensis HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
Thecc.05G271100 Theobroma cacao HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
HPP92_002516 Vanilla planifolia HOM05D003677 ORTHO05D004231 7.6e-21 104.0 57 84.2
HPP92_002535 Vanilla planifolia HOM05D003677 ORTHO05D004231 7.6e-21 104.0 57 84.2
Zm00001eb108490 Zea mays HOM05D003677 ORTHO05D004231 7.6e-21 104.0 52 90.4
CDE04G2392 Ceratophyllum demersum HOM05D003677 ORTHO05D004231 9.9e-21 103.6 52 90.4
CDE07G1504 Ceratophyllum demersum HOM05D003677 ORTHO05D004231 9.9e-21 103.6 52 90.4
Dinv35470 Davidia involucrata HOM05D003677 ORTHO05D004231 9.9e-21 103.6 52 90.4
FAN09G1189 Fragaria x ananassa HOM05D003677 ORTHO05D004231 9.9e-21 103.6 51 92.2
FAN14G1798 Fragaria x ananassa HOM05D003677 ORTHO05D004231 9.9e-21 103.6 51 92.2
FAN14G5891 Fragaria x ananassa HOM05D003677 ORTHO05D004231 9.9e-21 103.6 51 92.2
Lsat_1_v5_gn_1_9200 Lactuca sativa HOM05D003677 ORTHO05D004231 9.9e-21 103.6 52 90.4
Solyc05g055010.4 Solanum lycopersicum HOM05D003677 ORTHO05D004231 9.9e-21 103.6 62 82.3
unitig_61.g26069 Utricularia gibba HOM05D003677 ORTHO05D004231 9.9e-21 103.6 52 90.4
GSVIVG01023509001 Vitis vinifera HOM05D003677 ORTHO05D004231 9.9e-21 103.6 52 90.4
Zm00001eb185100 Zea mays HOM05D003677 ORTHO05D004231 9.9e-21 103.6 57 82.5
Nitab4.5_0003780g0080 Nicotiana tabacum HOM05D003677 ORTHO05D004231 1.3e-20 103.2 57 82.5
Peaxi162Scf00015g00308 Petunia axillaris HOM05D003677 ORTHO05D004231 1.3e-20 103.2 57 84.2
Hund06908 Selenicereus undatus HOM05D003677 ORTHO05D004231 1.3e-20 103.2 52 92.3
Sopen05g033470 Solanum pennellii HOM05D003677 ORTHO05D004231 1.3e-20 103.2 57 84.2
PGSC0003DMG400023407 Solanum tuberosum HOM05D003677 ORTHO05D004231 1.3e-20 103.2 57 84.2
DCAR_024364 Daucus carota HOM05D003677 ORTHO05D004231 1.7e-20 102.8 55 85.5
Gohir.D11G257800 Gossypium hirsutum HOM05D003677 ORTHO05D004231 1.7e-20 102.8 52 88.5
Gorai.007G276100 Gossypium raimondii HOM05D003677 ORTHO05D004231 1.7e-20 102.8 52 88.5
Os08g0567200 Oryza sativa ssp. japonica HOM05D003677 ORTHO05D004231 1.7e-20 102.8 52 88.5
THA.LOC104802833 Tarenaya hassleriana HOM05D003677 ORTHO05D004231 1.7e-20 102.8 52 88.5
Haze_04435 Corylus avellana HOM05D003677 ORTHO05D004231 2.2e-20 102.4 51 90.2
Duzib128G0961 Durio zibethinus HOM05D003677 ORTHO05D004231 2.2e-20 102.4 51 90.2
FAN02G0354 Fragaria x ananassa HOM05D000329 ORTHO05D000833 2.2e-20 102.4 51 90.2
SGA_v2.0_scaffold28G12049 Striga asiatica HOM05D003677 ORTHO05D004231 2.2e-20 102.4 52 90.4
Zm00001eb326740 Zea mays HOM05D003677 ORTHO05D004231 2.2e-20 102.4 52 88.5
Aqoxy5G00213 Aquilegia oxysepala HOM05D003677 ORTHO05D004231 2.9e-20 102.1 52 88.5
EL10Ac4g09010 Beta vulgaris HOM05D003677 ORTHO05D004231 2.9e-20 102.1 57 80.7
MBI07_g16912_MAGBIO Magnolia biondii HOM05D003677 ORTHO05D004231 2.9e-20 102.1 52 88.5
TAR633G1327 Trochodendron aralioides HOM05D003677 ORTHO05D004231 2.9e-20 102.1 52 88.5
vmacro10364 Vaccinium macrocarpon HOM05D003677 ORTHO05D004231 2.9e-20 102.1 57 82.5
Actinidia34752 Actinidia chinensis HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 88.5
Actinidia38938 Actinidia chinensis HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 88.5
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
BcaC05g29937 Brassica carinata HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
BcaC05g30193 Brassica carinata HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
A03p33640 Brassica napus HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
A05p42980 Brassica napus HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
C03p40840 Brassica napus HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
C05p62750 Brassica napus HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
BolC3t16355H Brassica oleracea HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
BolC5t34928H Brassica oleracea HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
BraA03t12539Z Brassica rapa HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
BraA05t23042Z Brassica rapa HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 86.5
CANSAT54G2642 Cannabis sativa HOM05D003677 ORTHO05D004231 3.8e-20 101.7 57 82.5
CARHR078690 Cardamine hirsuta HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 84.6
Nitab4.5_0001372g0020 Nicotiana tabacum HOM05D003677 ORTHO05D004231 3.8e-20 101.7 57 82.5
Potri.013G046900 Populus trichocarpa HOM05D003677 ORTHO05D004231 3.8e-20 101.7 58 81.0
Rhsim09G0137200 Rhododendron simsii HOM05D003677 ORTHO05D004231 3.8e-20 101.7 52 88.5
BcaC01g03318 Brassica carinata HOM05D003677 ORTHO05D004231 4.9e-20 101.3 57 78.9
Glyma.20G223000 Glycine max HOM05D003677 ORTHO05D004231 4.9e-20 101.3 57 82.5
HanXRQChr04g0108621 Helianthus annuus HOM05D003677 ORTHO05D004231 4.9e-20 101.3 52 88.5
Medtr1g080150 Medicago truncatula HOM05D003677 ORTHO05D004231 4.9e-20 101.3 57 82.5
Nn3g19689 Nelumbo nucifera HOM05D003677 ORTHO05D004231 4.9e-20 101.3 51 90.2
Solyc04g010000.3 Solanum lycopersicum HOM05D003677 ORTHO05D004231 4.9e-20 101.3 57 80.7
Sopen04g005150 Solanum pennellii HOM05D003677 ORTHO05D004231 4.9e-20 101.3 57 80.7
TAR362G0866 Trochodendron aralioides HOM05D003677 ORTHO05D004231 4.9e-20 101.3 52 88.5
Lalb_Chr02g0149101 Lupinus albus HOM05D003677 ORTHO05D004231 6.4e-20 100.9 53 86.8
PSO210G0146 Papaver somniferum HOM05D003677 ORTHO05D004231 6.4e-20 100.9 52 86.5
PSO210G2652 Papaver somniferum HOM05D003677 ORTHO05D004231 6.4e-20 100.9 52 86.5
PSO210G7560 Papaver somniferum HOM05D003677 ORTHO05D004231 6.4e-20 100.9 52 86.5
PSO832G1483 Papaver somniferum HOM05D003677 ORTHO05D004231 6.4e-20 100.9 52 86.5
Phvul.008G151836 Phaseolus vulgaris HOM05D003677 ORTHO05D004231 6.4e-20 100.9 52 88.5
Psat6g142680 Pisum sativum HOM05D003677 ORTHO05D004231 6.4e-20 100.9 57 80.7
VMungo0720G1875 Vigna mungo HOM05D003677 ORTHO05D004231 6.4e-20 100.9 52 88.5
AL3G14510 Arabidopsis lyrata HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 84.6
AT3G04500 Arabidopsis thaliana HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 84.6
Carub.0003s0366 Capsella rubella HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 84.6
Cpa.g.c35686 Carica papaya HOM05D003677 ORTHO05D004231 8.4e-20 100.5 51 90.2
Thhalv10021407m.g Eutrema salsugineum HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 84.6
Glyma.10G166200 Glycine max HOM05D003677 ORTHO05D004231 8.4e-20 100.5 57 82.5
Nitab4.5_0002915g0010 Nicotiana tabacum HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 86.5
Nitab4.5_0010738g0010 Nicotiana tabacum HOM05D003677 ORTHO05D004231 8.4e-20 100.5 57 80.7
Peaxi162Scf00152g00828 Petunia axillaris HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 86.5
Potri.019G018900 Populus trichocarpa HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 86.5
Sp3g03350 Schrenkiella parvula HOM05D003677 ORTHO05D004231 8.4e-20 100.5 52 84.6
Ca_10015_v3 Cicer arietinum L. HOM05D003677 ORTHO05D004231 1.1e-19 100.1 57 80.7
TPR.G22331 Trifolium pratense HOM05D003677 ORTHO05D004231 1.1e-19 100.1 57 80.7
TPR.G9915 Trifolium pratense HOM05D003677 ORTHO05D004231 1.1e-19 100.1 57 80.7
Lj5g0022615 Lotus japonicus HOM05D003677 ORTHO05D004231 1.4e-19 99.8 57 80.7
Migut.F01271 Erythranthe guttata HOM05D003677 ORTHO05D004231 1.9e-19 99.4 52 86.5
Sopen04g005130 Solanum pennellii HOM05D003677 ORTHO05D004231 1.9e-19 99.4 57 78.9
Atru.chr4.2875 Acer truncatum HOM05D003677 ORTHO05D004231 2.4e-19 99.0 52 84.6
THA.LOC104827474 Tarenaya hassleriana HOM05D003677 ORTHO05D004231 2.4e-19 99.0 52 84.6
ATR0736G218 Amborella trichopoda HOM05D003677 ORTHO05D004231 3.2e-19 98.6 52 86.5
arahy.Tifrunner.gnm1.ann1.64W5EF Arachis hypogaea HOM05D003677 ORTHO05D004231 3.2e-19 98.6 51 84.3
Glyma.11G011000 Glycine max HOM05D003677 ORTHO05D004231 3.2e-19 98.6 57 78.9
Mapoly0213s0004 Marchantia polymorpha HOM05D003677 ORTHO05D004231 3.2e-19 98.6 52 84.6
Pp3c23_14650 Physcomitrium patens HOM05D003677 ORTHO05D004231 3.2e-19 98.6 57 78.9
arahy.Tifrunner.gnm1.ann1.5GL5JK Arachis hypogaea HOM05D003677 ORTHO05D004231 4.1e-19 98.2 56 80.4
SMO367G0071 Selaginella moellendorffii HOM05D003677 ORTHO05D004231 4.1e-19 98.2 52 84.6
AagrBONN_evm.TU.Sc2ySwM_228.2901 Anthoceros agrestis HOM05D003677 ORTHO05D004231 5.4e-19 97.8 52 82.7
Nitab4.5_0000718g0030 Nicotiana tabacum HOM05D003677 ORTHO05D004231 5.4e-19 97.8 52 84.6
THA.LOC104805782 Tarenaya hassleriana HOM05D003677 ORTHO05D004231 7.1e-19 97.4 52 88.5
SEGI_18661 Sequoiadendron giganteum HOM05D003677 ORTHO05D004231 9.2e-19 97.1 52 82.7
Lalb_Chr16g0386451 Lupinus albus HOM05D003677 ORTHO05D004231 2.1e-18 95.9 57 73.7
Lalb_Chr09g0329801 Lupinus albus HOM05D003677 ORTHO05D004231 2.7e-18 95.5 57 73.7
Nitab4.5_0000687g0030 Nicotiana tabacum HOM05D003677 ORTHO05D004231 4.6e-18 94.7 58 79.3
Migut.I00390 Erythranthe guttata HOM05D003677 ORTHO05D004231 7.8e-18 94.0 60 70.0
Nitab4.5_0003780g0100 Nicotiana tabacum HOM05D003677 ORTHO05D004231 7.8e-18 94.0 57 75.4
Migut.I00391 Erythranthe guttata HOM05D003677 ORTHO05D004231 1.3e-17 93.2 72 59.7
Gorai.013G187700 Gossypium raimondii HOM05D003677 ORTHO05D004231 1.3e-17 93.2 54 77.8
CBR_g52330 Chara braunii HOM05D003677 ORTHO05D004231 1.7e-17 92.8 52 78.8
Solyc04g010040.3 Solanum lycopersicum HOM05D003677 ORTHO05D004231 2.3e-17 92.4 52 76.9
Sopen04g005170 Solanum pennellii HOM05D003677 ORTHO05D004231 2.3e-17 92.4 52 76.9
Aa31LG5G14940 Aethionema arabicum HOM05D003677 ORTHO05D004231 7.3e-16 87.4 70 61.4
Hund22161 Selenicereus undatus HOM05D003677 ORTHO05D004231 3.1e-14 82.0 97 48.5
Haze_26142 Corylus avellana HOM05D003677 ORTHO05D004231 5.2e-14 81.3 57 63.2
Aqoxy2G03669 Aquilegia oxysepala HOM05D003677 ORTHO05D004231 3.4e-13 78.6 63 61.9
Nitab4.5_0002478g0040 Nicotiana tabacum HOM05D003677 ORTHO05D004231 5.8e-13 77.8 47 72.3
arahy.Tifrunner.gnm1.ann1.U10W7S Arachis hypogaea HOM05D003677 ORTHO05D004231 6.4e-12 74.3 114 40.4
MCO06G051 Micromonas commoda HOM05D003677 ORTHO05D004231 5.4e-11 71.2 52 59.6
arahy.Tifrunner.gnm1.ann1.UY3EWL Arachis hypogaea HOM05D003677 ORTHO05D004231 1.6e-10 69.7 60 58.3
Cre02.g088800 Chlamydomonas reinhardtii HOM05D003677 ORTHO05D004231 2.1e-10 69.3 52 53.8
CSS0031912 Camellia sinensis var. sinensis HOM05D003677 ORTHO05D004231 4.6e-10 68.2 35 91.4
CSS0033866 Camellia sinensis var. sinensis HOM05D003677 ORTHO05D004231 4.6e-10 68.2 35 91.4
Lj2A42G39 Lonicera japonica HOM05D003677 ORTHO05D004231 1.7e-09 66.2 34 91.2
Peaxi162Scf00528g00119 Petunia axillaris HOM05D003677 ORTHO05D004231 3.9e-09 65.1 40 72.5
Nitab4.5_0006737g0100 Nicotiana tabacum HOM05D003677 ORTHO05D004231 5.1e-09 64.7 56 62.5
C03p53720 Brassica napus HOM05D003677 ORTHO05D004231 4.3e-08 61.6 34 79.4
CARHR219880 Cardamine hirsuta HOM05D003677 ORTHO05D004231 2.1e-07 59.3 54 51.9


User provided reference genes

Program Settings