Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 2.2e-50 202.2 116 100.0
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.1e-46 189.9 116 93.1
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 3.2e-46 188.3 116 92.2
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.6e-45 186.0 116 91.4
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.6e-45 186.0 116 91.4
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.1e-45 185.7 116 91.4
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.1e-45 185.7 116 91.4
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 4.6e-45 184.5 116 89.7
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 4.6e-45 184.5 116 90.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.6e-45 184.5 116 89.7
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.4e-44 183.0 116 88.8
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 1.8e-44 182.6 116 90.5
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 89.7
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 89.7
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 88.8
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 87.9
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 3.9e-44 181.4 114 89.5
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 3.9e-44 181.4 116 89.7
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 5.1e-44 181.0 116 89.7
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.1e-43 179.9 116 89.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.1e-43 179.9 117 89.7
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.1e-43 179.9 116 87.9
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.5e-43 179.5 116 88.8
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.0e-43 179.1 117 88.0
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 2.0e-43 179.1 117 89.7
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.5e-43 178.7 116 87.1
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 2.5e-43 178.7 116 87.9
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.3e-43 178.3 119 89.9
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 3.3e-43 178.3 114 87.7
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 4.3e-43 177.9 117 88.9
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.7e-42 176.0 116 87.1
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.7e-42 176.0 116 86.2
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 2.8e-42 175.3 116 85.3
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.8e-42 175.3 119 88.2
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 86.2
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 85.3
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 85.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.7e-42 174.9 118 87.3
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 6.3e-42 174.1 116 85.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.1e-41 173.3 116 86.2
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.4e-41 172.9 120 85.0
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 1.4e-41 172.9 120 84.2
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.4e-41 172.9 116 86.2
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 3.1e-41 171.8 116 85.3
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 4.1e-41 171.4 120 84.2
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 5.3e-41 171.0 116 84.5
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 5.3e-41 171.0 116 84.5
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 5.3e-41 171.0 116 85.3
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 6.9e-41 170.6 116 86.2
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 6.9e-41 170.6 116 83.6
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 6.9e-41 170.6 114 83.3
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 9.1e-41 170.2 116 83.6
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.5e-40 169.5 117 86.3
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.5e-40 169.5 116 85.3
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 2.0e-40 169.1 117 84.6
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 4.5e-40 167.9 114 83.3
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 4.5e-40 167.9 117 84.6
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 5.9e-40 167.5 112 84.8
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.0e-39 166.8 116 85.3
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.7e-39 166.0 120 82.5
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.7e-39 166.0 137 73.7
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.7e-39 166.0 114 82.5
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 2.2e-39 165.6 116 81.0
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 2.9e-39 165.2 119 82.4
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 6.5e-39 164.1 116 82.8
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 8.5e-39 163.7 119 81.5
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-38 163.3 119 81.5
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.1e-38 163.3 119 81.5
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.4e-38 162.9 116 80.2
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 4.2e-38 161.4 119 79.8
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 4.2e-38 161.4 119 80.7
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 5.5e-38 161.0 117 82.9
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 7.2e-38 160.6 116 79.3
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 9.4e-38 160.2 117 78.6
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.2e-37 159.8 104 87.5
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.7e-37 158.7 119 79.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 2.7e-37 158.7 116 81.9
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 4.7e-37 157.9 116 78.4
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 6.1e-37 157.5 103 86.4
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 6.1e-37 157.5 112 83.0
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 2.3e-36 155.6 116 80.2
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 2.3e-36 155.6 115 79.1
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 3.0e-36 155.2 152 65.1
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 3.9e-36 154.8 115 78.3
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 8.8e-36 153.7 117 81.2
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 8.8e-36 153.7 116 79.3
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.5e-35 152.9 116 80.2
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 2.0e-35 152.5 110 79.1
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 3.3e-35 151.8 110 78.2
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 3.3e-35 151.8 108 80.6
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 4.4e-35 151.4 108 79.6
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 5.7e-35 151.0 108 80.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 7.4e-35 150.6 114 77.2
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.8e-34 147.9 116 75.9
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 8.2e-34 147.1 110 78.2
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.4e-33 145.6 142 66.2
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 7.0e-33 144.1 89 91.0
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 9.1e-33 143.7 116 75.9
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.2e-32 143.3 116 75.9
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.5e-32 142.9 114 75.4
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.6e-32 142.1 119 76.5
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 4.5e-32 141.4 114 74.6
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-31 139.0 119 75.6
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-31 139.0 119 75.6
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.2e-31 139.0 117 75.2
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 8.5e-31 137.1 120 71.7
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.1e-30 136.7 119 73.9
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.1e-29 132.5 82 90.2
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.4e-28 129.8 119 72.3
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.8e-28 129.4 94 77.7
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.3e-28 129.0 116 68.1
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 5.2e-28 127.9 80 88.8
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 8.8e-28 127.1 116 69.0
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 5.7e-27 124.4 82 86.6
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 7.4e-27 124.0 80 86.2
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 7.4e-27 124.0 80 85.0
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.3e-26 123.2 116 68.1
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.8e-26 122.1 83 84.3
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 6.3e-26 120.9 119 67.2
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.0e-23 113.6 81 80.2
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 2.2e-23 112.5 83 77.1
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.2e-23 112.5 66 93.9
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 2.9e-23 112.1 68 91.2
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 8.5e-23 110.5 70 87.1
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.1e-22 110.2 81 75.3
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 2.5e-22 109.0 116 62.9
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 4.0e-20 101.7 73 79.5
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 4.0e-20 101.7 119 54.6
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 5.2e-20 101.3 114 59.6
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 2.6e-19 99.0 68 82.4
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.3e-18 96.7 83 63.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 4.8e-18 94.7 116 55.2
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.2e-16 90.1 54 90.7
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.7e-16 89.0 58 84.5
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.3e-15 86.7 54 88.9
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 8.5e-15 84.0 87 54.0
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 1.2e-13 80.1 75 72.0
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.6e-13 79.7 48 91.7
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 3.0e-12 75.5 257 31.9
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 7.5e-11 70.9 110 45.5
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.8e-10 68.9 48 77.1
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 5.4e-09 64.7 48 81.2
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 7.0e-09 64.3 51 72.5
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.9e-06 56.2 39 79.5


User provided reference genes

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