Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 2.0e-176 622.5 349 100.0
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 3.1e-52 209.9 353 49.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 8.2e-45 185.3 411 45.0
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 6.9e-44 182.2 344 40.1
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.0e-39 168.3 378 38.1
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 9.7e-38 161.8 361 42.4
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.3e-37 161.4 347 36.9
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.2e-37 160.6 347 36.9
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 2.0e-35 154.1 378 35.7
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 2.6e-35 153.7 367 42.0
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.4e-33 147.9 409 33.3
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.9e-33 147.5 391 43.5
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 4.2e-33 146.4 391 34.0
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.2e-32 144.8 350 42.6
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 2.1e-32 144.1 361 36.8
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.6e-32 143.3 377 40.6
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.0e-31 140.2 358 41.1
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 1.1e-30 138.3 366 34.2
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 3.3e-30 136.7 414 38.6
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 7.4e-30 135.6 367 41.4
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 9.7e-30 135.2 350 36.9
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 1.3e-29 134.8 424 31.4
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 3.7e-29 133.3 367 33.2
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.8e-28 131.0 373 39.4
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 2.6e-27 127.1 348 33.6
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 3.5e-27 126.7 387 37.0
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 3.5e-27 126.7 366 38.5
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 3.5e-27 126.7 351 35.3
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.5e-27 126.7 370 34.3
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.0e-26 125.2 368 38.9
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 1.3e-26 124.8 353 36.3
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.1e-25 121.7 346 32.7
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.9e-25 120.9 368 33.7
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 2.5e-25 120.6 362 36.7
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 2.5e-25 120.6 361 33.0
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 4.2e-25 119.8 336 33.9
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 5.5e-25 119.4 387 37.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 9.4e-25 118.6 344 34.0
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 9.4e-25 118.6 354 33.1
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.2e-24 118.2 341 32.8
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.6e-24 117.9 424 33.7
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.6e-24 117.9 378 37.3
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.7e-24 117.1 356 33.7
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.7e-24 117.1 358 32.4
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 4.7e-24 116.3 390 33.1
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 4.7e-24 116.3 352 34.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 6.1e-24 115.9 374 34.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 2.3e-23 114.0 372 32.3
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 5.2e-23 112.8 358 32.1
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.0e-22 110.9 352 35.5
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.4e-22 109.8 365 32.1
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 5.7e-22 109.4 358 32.7
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 7.5e-22 109.0 361 33.2
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.3e-21 108.2 361 31.6
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.7e-21 107.8 388 31.7
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.2e-21 107.5 356 36.5
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 2.8e-21 107.1 371 30.7
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.8e-21 107.1 360 36.4
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 6.3e-21 105.9 370 32.7
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 6.3e-21 105.9 348 37.4
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 8.2e-21 105.5 356 35.7
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 1.1e-20 105.1 344 30.5
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 4.1e-20 103.2 364 33.8
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 5.3e-20 102.8 353 34.8
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 5.3e-20 102.8 353 34.0
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 7.0e-20 102.4 327 31.8
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 9.1e-20 102.1 362 35.4
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.2e-19 101.7 347 38.0
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 1.6e-19 101.3 369 41.2
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 2.0e-19 100.9 419 31.3
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 4.5e-19 99.8 351 32.8
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 5.9e-19 99.4 361 30.5
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 7.7e-19 99.0 352 33.8
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.0e-18 98.6 350 32.6
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.3e-18 98.2 340 29.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.7e-18 97.8 345 37.7
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 2.2e-18 97.4 373 29.2
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 2.9e-18 97.1 357 36.1
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 2.9e-18 97.1 340 32.4
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 5.0e-18 96.3 390 32.8
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 8.5e-18 95.5 368 32.6
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 8.5e-18 95.5 351 31.9
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.5e-17 94.7 233 36.9
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 2.5e-17 94.0 429 27.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 4.2e-17 93.2 348 31.0
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 2.1e-16 90.9 387 28.9
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 3.6e-16 90.1 352 31.5
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.8e-15 87.8 333 30.0
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 2.3e-15 87.4 216 38.4
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 3.0e-15 87.0 343 31.2
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 5.2e-15 86.3 91 54.9
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.0e-14 84.3 209 35.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.6e-14 84.0 297 31.0
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 3.4e-14 83.6 359 27.3
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.7e-14 82.8 346 32.4
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 2.8e-13 80.5 370 33.2
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 8.3e-13 79.0 365 34.5
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 2.4e-12 77.4 368 34.5
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 3.1e-12 77.0 351 30.8
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 2.0e-11 74.3 357 30.8
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.7e-11 73.9 411 25.5
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.9e-11 72.8 92 51.1
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 1.0e-10 72.0 360 28.1
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.7e-10 71.2 93 41.9
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.5e-09 68.2 82 47.6
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 5.5e-09 66.2 100 46.0
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 1.6e-08 64.7 122 36.9
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 2.1e-08 64.3 197 34.5
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.6e-08 63.5 339 29.8
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.0e-07 62.0 133 37.6
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 1.4e-07 61.6 79 46.8
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 1.8e-07 61.2 122 36.1
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 1.8e-07 61.2 277 36.5
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 5.2e-07 59.7 197 35.5
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 4.4e-06 56.6 222 32.4
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 9.8e-06 55.5 191 34.6
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 9.8e-06 55.5 312 25.0


User provided reference genes

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