Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.5e-95 352.8 180 100.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.0e-72 273.9 144 99.3
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 7.7e-39 164.5 144 63.9
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 7.7e-39 164.5 144 67.4
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.2e-38 162.9 143 62.9
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.7e-36 156.0 135 63.7
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.7e-36 155.2 135 63.7
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.4e-35 153.7 144 62.5
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.3e-35 152.9 145 58.6
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.3e-35 152.9 144 59.7
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 8.8e-35 151.0 144 59.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.2e-34 150.6 144 59.0
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.5e-34 150.2 146 61.0
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 4.4e-34 148.7 144 58.3
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 7.5e-34 147.9 144 59.7
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.8e-33 146.0 144 57.6
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 8.3e-33 144.4 145 58.6
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.4e-32 143.7 146 56.8
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 2.4e-32 142.9 125 61.6
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 9.1e-32 141.0 144 56.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 3.6e-28 129.0 139 55.4
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.0e-27 127.5 146 52.1
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 4.4e-26 122.1 147 51.0
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 9.8e-26 120.9 95 69.5
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.7e-25 120.2 128 55.5
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 2.8e-25 119.4 147 55.1
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.7e-25 119.0 131 56.5
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.7e-25 119.0 131 56.5
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 3.7e-25 119.0 131 56.5
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 3.7e-25 119.0 151 48.3
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 8.3e-25 117.9 141 49.6
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 1.4e-24 117.1 130 54.6
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.1e-24 115.9 131 54.2
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 4.1e-24 115.5 129 52.7
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 4.1e-24 115.5 152 46.7
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 9.2e-24 114.4 152 48.7
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.0e-23 113.2 129 54.3
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 2.0e-23 113.2 148 46.6
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 3.5e-23 112.5 136 51.5
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 5.9e-23 111.7 151 45.7
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.3e-22 110.5 138 51.4
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.3e-22 110.5 147 47.6
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.7e-22 110.2 130 52.3
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.9e-22 109.4 138 50.0
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.9e-22 109.4 147 46.9
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.9e-22 109.4 135 50.4
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.1e-21 107.5 131 51.9
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.5e-21 107.1 150 43.3
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.5e-21 107.1 135 49.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 1.9e-21 106.7 131 51.1
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 5.6e-21 105.1 129 48.8
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 5.6e-21 105.1 139 49.6
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 7.3e-21 104.8 129 50.4
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 9.5e-21 104.4 147 44.9
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.6e-20 103.6 138 47.1
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.1e-20 103.2 124 47.6
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 2.8e-20 102.8 124 47.6
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 4.7e-20 102.1 139 47.5
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.1e-20 101.7 137 48.2
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 8.0e-20 101.3 151 45.7
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.0e-19 100.9 135 48.9
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 3.0e-19 99.4 139 45.3
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 5.2e-19 98.6 129 46.5
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 5.2e-19 98.6 139 45.3
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 6.8e-19 98.2 132 45.5
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 8.9e-19 97.8 131 46.6
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.9e-19 97.8 137 46.7
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.2e-18 97.4 147 44.9
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.6e-18 96.3 131 46.6
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 3.4e-18 95.9 99 52.5
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.4e-18 95.9 130 49.2
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.4e-18 95.9 130 49.2
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 4.4e-18 95.5 123 50.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 4.4e-18 95.5 126 50.0
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 4.4e-18 95.5 123 44.7
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 4.4e-18 95.5 125 47.2
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 5.7e-18 95.1 125 48.8
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 5.7e-18 95.1 137 45.3
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 7.5e-18 94.7 147 44.2
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 7.5e-18 94.7 130 46.2
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.3e-17 94.0 130 43.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.3e-17 94.0 151 44.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 2.2e-17 93.2 128 45.3
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 3.7e-17 92.4 137 43.8
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 4.9e-17 92.0 123 43.9
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 6.4e-17 91.7 138 43.5
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.1e-16 90.9 120 47.5
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.8e-16 90.1 147 43.5
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.8e-16 90.1 139 44.6
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 2.4e-16 89.7 137 43.8
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 2.4e-16 89.7 131 43.5
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 2.4e-16 89.7 131 43.5
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 5.4e-16 88.6 105 49.5
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 4.6e-15 85.5 131 41.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 5.9e-15 85.1 130 40.8
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 5.9e-15 85.1 130 42.3
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 5.9e-15 85.1 139 41.7
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 7.8e-15 84.7 137 43.1
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.3e-14 84.0 130 41.5
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 2.3e-14 83.2 130 40.0
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 2.3e-14 83.2 130 40.0
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 5.0e-14 82.0 129 43.4
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 8.6e-14 81.3 145 44.1
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.1e-13 80.9 128 39.8
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.1e-13 80.9 115 46.1
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.1e-13 80.9 100 47.0
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.5e-13 80.5 147 40.8
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.5e-13 80.5 117 44.4
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.5e-13 80.5 127 46.5
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.4e-11 73.9 127 41.7
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.8e-11 73.6 138 39.9
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 2.3e-11 73.2 133 37.6
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.7e-09 67.0 72 55.6
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.2e-09 66.6 129 38.0
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 2.9e-09 66.2 92 44.6
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.1e-08 64.3 142 35.9
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 1.9e-08 63.5 70 48.6
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.0e-07 60.1 69 50.7


User provided reference genes

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