Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 9.0e-178 627.1 386 100.0
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 6.3e-139 498.0 338 79.3
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 1.1e-138 497.3 318 83.3
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 2.9e-136 489.2 338 79.3
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 2.9e-136 489.2 338 79.3
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 7.2e-135 484.6 339 77.6
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 2.1e-134 483.0 336 77.4
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 4.0e-133 478.8 314 79.9
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 3.4e-132 475.7 337 77.2
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 7.5e-132 474.6 341 77.7
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 9.8e-132 474.2 298 83.2
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.3e-131 473.8 337 76.9
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 2.2e-131 473.0 334 78.4
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.2e-131 473.0 335 75.8
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 4.8e-131 471.9 318 78.6
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 8.3e-131 471.1 299 82.9
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 8.3e-131 471.1 299 82.9
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 8.3e-131 471.1 344 75.9
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 1.1e-130 470.7 308 79.9
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 4.1e-130 468.8 340 76.2
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 5.4e-130 468.4 338 76.0
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 7.0e-130 468.0 312 78.2
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 7.0e-130 468.0 322 78.6
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 3.8e-128 462.2 319 79.0
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 8.6e-128 461.1 372 70.4
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 4.2e-127 458.8 318 77.4
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 4.2e-127 458.8 318 77.0
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.2e-127 458.8 272 85.3
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 9.5e-127 457.6 345 72.5
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 2.8e-126 456.1 312 79.5
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 2.8e-126 456.1 342 74.3
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 2.8e-126 456.1 318 77.0
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.8e-126 456.1 308 77.9
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 4.0e-125 452.2 342 74.0
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 4.0e-125 452.2 337 73.6
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 5.2e-125 451.8 321 75.4
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 6.8e-125 451.4 326 76.4
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 8.9e-125 451.1 335 75.8
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 1.2e-124 450.7 332 73.8
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 3.4e-124 449.1 354 69.5
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 3.4e-124 449.1 332 74.1
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 7.5e-124 448.0 322 73.9
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 7.5e-124 448.0 317 75.7
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 2.2e-123 446.4 351 71.8
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 2.8e-123 446.0 311 77.8
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 3.7e-123 445.7 352 70.7
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 3.7e-123 445.7 334 72.5
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 3.7e-123 445.7 263 85.9
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 3.1e-122 442.6 318 74.2
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 4.1e-122 442.2 274 83.6
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 5.4e-122 441.8 336 71.7
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 5.4e-122 441.8 291 80.4
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 9.2e-122 441.0 308 76.6
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 1.6e-121 440.3 316 74.4
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.0e-121 439.9 311 76.5
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 2.0e-121 439.9 336 69.0
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 3.5e-121 439.1 320 75.3
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 5.9e-121 438.3 336 72.0
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 1.7e-120 436.8 412 62.6
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 2.3e-120 436.4 362 68.2
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 2.9e-120 436.0 298 77.2
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 5.0e-120 435.3 319 73.7
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 8.6e-120 434.5 263 84.4
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 1.1e-119 434.1 345 71.6
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 1.2e-118 430.6 316 72.8
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 1.2e-118 430.6 311 74.3
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-118 430.3 316 74.1
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 1.6e-118 430.3 327 72.2
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 6.1e-118 428.3 341 69.5
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 1.0e-117 427.6 268 82.8
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.0e-117 427.6 313 74.8
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.0e-117 427.6 313 74.8
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 1.8e-117 426.8 341 68.9
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 4.0e-117 425.6 311 72.7
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 4.0e-117 425.6 311 73.0
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 6.8e-117 424.9 311 72.7
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 8.9e-117 424.5 311 72.3
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 8.9e-117 424.5 311 73.0
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 8.9e-117 424.5 311 73.0
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.5e-116 423.7 326 70.9
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 2.6e-116 422.9 311 72.0
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 2.6e-116 422.9 272 80.5
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 1.7e-115 420.2 296 74.3
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 1.1e-114 417.5 316 72.5
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 3.2e-114 416.0 315 74.0
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 4.1e-114 415.6 270 77.8
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 5.4e-114 415.2 343 66.8
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 3.3e-111 406.0 310 71.6
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.2e-110 404.1 323 70.9
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 1.6e-110 403.7 344 65.4
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 1.6e-110 403.7 313 70.9
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 1.2e-108 397.5 316 68.0
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 7.5e-108 394.8 246 81.7
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 3.2e-106 389.4 303 70.3
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 2.0e-105 386.7 240 81.7
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.0e-104 382.9 242 81.8
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.7e-102 375.6 242 81.4
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 1.8e-101 373.6 332 65.1
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 4.1e-98 362.5 268 68.3
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 7.1e-98 361.7 306 63.7
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 7.1e-98 361.7 271 66.8
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 2.2e-91 340.1 271 64.9
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.4e-90 337.4 267 64.4
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 3.2e-90 336.3 364 56.3
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 9.2e-90 334.7 224 79.5
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 9.2e-90 334.7 302 61.3
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.6e-89 334.0 335 59.1
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.0e-88 329.7 300 58.0
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.0e-88 329.7 300 58.0
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.9e-82 310.5 265 58.9
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 2.4e-82 310.1 312 53.8
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 1.6e-81 307.4 223 73.1
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 3.0e-80 303.1 341 51.0
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.8e-77 293.9 291 60.1
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.6e-73 279.3 333 52.3
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.4e-69 267.7 170 83.5
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.5e-68 262.7 198 71.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.9e-67 259.2 224 62.9
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.0e-52 210.7 216 52.8
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 6.5e-51 205.7 116 86.2
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.7e-46 189.9 158 66.5
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.2e-30 137.5 109 72.5
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 9.1e-29 132.1 93 69.9
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.6e-28 131.3 110 59.1
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.0e-19 102.1 103 63.1
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 1.3e-19 101.7 335 26.3
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 2.5e-18 97.4 252 30.2
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 4.2e-18 96.7 62 71.0
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 4.0e-16 90.1 113 45.1
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 1.3e-06 58.5 38 71.1


User provided reference genes

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