Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1758.8 850 100.0
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1279.6 854 71.3
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1275.0 884 69.6
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1266.5 852 70.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1262.3 852 70.4
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1260.4 852 70.5
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1259.6 852 70.2
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1250.3 850 70.5
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1250.3 886 68.3
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 851 68.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1245.7 851 69.7
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1244.6 852 69.8
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1242.3 852 68.8
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1240.3 853 68.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1239.2 853 69.9
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1237.6 853 68.6
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1232.6 852 69.1
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1228.4 854 68.4
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 850 68.8
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 853 68.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1221.5 853 67.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1219.9 853 67.8
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1218.4 848 68.3
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1214.5 876 67.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1208.4 972 61.1
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1207.2 855 66.9
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1205.7 810 71.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 855 67.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1200.7 852 66.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 864 67.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1196.8 851 66.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 852 67.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1194.1 821 68.7
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 812 70.1
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 853 67.6
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 853 66.9
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1190.6 855 66.1
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 851 66.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1186.0 850 65.9
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1185.2 855 66.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1184.5 861 65.5
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 859 65.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 855 66.2
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1170.2 862 65.1
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1167.9 854 65.7
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1165.6 854 65.9
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1164.1 860 65.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 858 64.5
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1162.9 859 64.5
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 854 65.8
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1161.4 869 64.1
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1160.6 853 65.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 856 65.1
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 850 64.4
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1159.8 851 64.5
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1159.8 860 64.9
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1159.4 859 64.3
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 856 63.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 856 64.4
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1153.3 857 65.1
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 857 65.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 854 65.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1150.6 850 63.4
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1149.4 854 65.6
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1147.9 856 64.1
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1147.9 854 64.5
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 849 63.6
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1144.4 852 64.3
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1132.9 854 64.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 854 63.0
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1125.5 851 62.7
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 854 62.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 856 62.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 856 63.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 859 62.6
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1114.0 851 61.8
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1112.8 856 62.4
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1110.5 727 71.4
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1109.7 886 60.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1109.7 857 62.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1107.8 852 62.6
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 858 62.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 849 62.1
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1102.4 871 61.3
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 872 61.0
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1082.8 892 59.9
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 857 60.9
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 8.7e-311 1070.1 718 69.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.2e-310 1069.7 849 60.3
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 3.7e-309 1064.7 862 60.8
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 4.1e-308 1061.2 859 59.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.2e-304 1049.7 777 62.9
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 6.2e-304 1047.3 851 58.3
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.0e-303 1046.6 774 62.7
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.0e-303 1046.6 826 60.2
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 6.8e-303 1043.9 826 60.9
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 9.8e-302 1040.0 845 59.6
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 9.8e-302 1040.0 750 64.3
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 5.4e-300 1034.2 771 63.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 2.0e-299 1032.3 764 65.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.0e-298 1030.0 771 62.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.0e-298 1030.0 866 57.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.3e-298 1029.6 775 62.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 772 61.7
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-296 1023.1 778 62.2
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.6e-296 1022.7 774 61.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.4e-295 1019.6 864 58.7
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 4.0e-295 1018.1 807 60.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.8e-295 1017.3 881 57.2
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 9.8e-294 1013.4 780 61.2
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 2.9e-285 985.3 773 60.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.2e-283 979.9 794 58.4
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 4.6e-283 978.0 849 55.8
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 3.1e-279 965.3 868 55.6
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.1e-279 965.3 910 53.0
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 6.8e-279 964.1 766 60.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.2e-261 906.0 803 55.5
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 8.7e-250 867.5 651 64.4
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 6.5e-245 851.3 861 49.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.8e-240 835.1 779 53.4
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.7e-237 826.6 823 49.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-236 823.5 798 52.8
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.8e-232 809.3 623 62.4
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.6e-230 802.7 859 47.1
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 2.3e-226 789.6 791 50.2
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 6.7e-226 788.1 663 61.5
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 4.4e-225 785.4 599 64.1
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-212 744.2 784 50.3
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.7e-211 738.8 434 76.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 6.3e-208 728.4 471 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 6.3e-200 701.8 663 51.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.3e-196 689.1 442 70.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.1e-183 647.9 428 68.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.0e-181 639.8 591 55.3
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 4.3e-172 609.4 662 49.5
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 8.4e-168 595.1 464 60.8
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 9.2e-167 591.7 504 56.0
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.1e-163 580.5 866 38.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 4.9e-144 516.2 572 50.0
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.9e-135 487.6 321 67.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.0e-129 467.6 271 77.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 5.5e-127 459.5 774 37.5
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.5e-119 433.0 332 62.0
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 3.3e-116 423.7 434 50.5
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.4e-114 418.3 410 51.5
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.6e-102 377.1 420 48.6
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 3.0e-101 374.0 246 70.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.6e-94 351.7 435 45.3
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.9e-87 328.2 400 46.8
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.8e-85 321.6 827 30.6
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.9e-83 313.5 527 35.1
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 6.6e-72 276.6 209 64.6
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 6.2e-70 270.0 202 63.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.3e-56 224.9 138 73.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 4.9e-51 207.2 100 90.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.3e-48 198.4 166 53.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.4e-42 178.3 119 70.6
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.3e-40 171.8 193 47.7
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 4.3e-31 141.0 82 78.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 4.9e-27 127.5 198 38.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 8.4e-27 126.7 125 56.0
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 3.2e-26 124.8 85 67.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 7.4e-23 113.6 69 73.9
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 4.0e-21 107.8 81 65.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.2e-20 106.3 95 57.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.5e-18 98.6 84 53.6
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 4.2e-18 97.8 84 56.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 6.0e-17 94.0 61 72.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.1e-15 89.7 45 84.4
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.3e-14 84.0 40 85.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.8e-13 82.4 39 87.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 4.5e-12 77.8 44 81.8
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 3.2e-10 71.6 59 54.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.1e-09 68.9 95 38.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-09 68.2 94 39.4
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.0e-08 66.6 64 54.7


User provided reference genes

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