Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.7e-235 818.9 402 100.0
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 8.2e-190 667.2 403 79.2
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 4.8e-166 588.2 403 69.2
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 8.8e-160 567.4 403 67.0
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.2e-158 562.8 403 66.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 4.8e-158 561.6 411 65.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 7.0e-157 557.8 403 65.0
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 4.5e-156 555.1 403 64.5
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.2e-155 552.7 403 64.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 3.0e-152 542.3 404 63.4
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 6.8e-152 541.2 403 61.8
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.8e-151 537.3 386 66.6
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 2.8e-150 535.8 401 62.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.4e-149 533.5 403 62.3
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.8e-149 533.1 401 62.8
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.8e-149 533.1 397 63.2
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 4.1e-149 531.9 397 64.7
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 7.0e-149 531.2 403 63.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 9.2e-149 530.8 403 60.8
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-148 530.0 412 61.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.6e-148 530.0 402 61.4
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.6e-148 530.0 401 61.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.0e-148 529.6 403 63.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.0e-148 529.6 403 63.0
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.7e-148 529.3 402 61.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.7e-148 529.3 402 61.4
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 4.5e-148 528.5 402 61.9
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.9e-148 528.1 400 62.2
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 5.9e-148 528.1 402 62.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.3e-147 526.9 398 63.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.3e-147 526.2 405 61.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.8e-147 525.4 407 60.9
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 5.0e-147 525.0 398 63.3
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 8.6e-147 524.2 405 62.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-146 523.9 397 62.5
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.3e-146 521.9 405 62.2
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 9.5e-146 520.8 401 62.3
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 9.5e-146 520.8 397 64.7
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.2e-145 520.4 397 61.0
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.6e-145 520.0 405 61.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.1e-145 519.6 403 60.5
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.1e-145 519.6 398 62.6
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.6e-145 518.8 386 63.5
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 3.6e-145 518.8 396 62.4
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.7e-145 518.5 397 62.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 6.1e-145 518.1 403 62.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.1e-145 518.1 391 62.4
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.0e-145 517.7 398 62.3
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.0e-144 517.3 398 62.6
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.4e-144 516.9 391 62.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.8e-144 516.5 391 62.1
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 4.0e-144 515.4 395 62.8
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.0e-143 513.1 395 63.3
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.0e-143 513.1 403 60.5
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 2.6e-143 512.7 396 60.1
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.5e-143 511.1 405 60.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 9.8e-143 510.8 398 61.1
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.7e-142 508.8 397 61.5
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.1e-141 507.3 416 59.9
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.1e-141 507.3 401 60.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-141 507.3 404 60.1
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 3.2e-141 505.8 397 61.7
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 5.4e-141 505.0 397 59.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.2e-140 503.8 396 58.6
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.6e-140 503.4 404 59.7
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.7e-140 502.7 395 61.0
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.3e-139 500.4 407 60.0
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.3e-139 500.4 388 60.3
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 3.0e-139 499.2 403 59.1
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 6.6e-139 498.0 395 58.5
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.3e-138 495.4 385 61.6
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.3e-138 495.4 391 60.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 9.5e-138 494.2 403 60.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.2e-137 493.8 396 60.1
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.8e-137 492.7 397 58.9
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 4.7e-137 491.9 399 58.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 4.7e-137 491.9 391 60.6
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 8.0e-137 491.1 398 59.5
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.0e-136 490.7 399 59.4
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.0e-136 490.7 398 59.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.0e-136 490.7 398 59.5
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 1.4e-136 490.3 398 59.0
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.4e-136 490.3 398 59.5
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.8e-136 490.0 398 59.5
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 6.8e-136 488.0 394 57.4
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 6.8e-136 488.0 384 59.4
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 8.9e-136 487.6 399 58.9
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 4.4e-135 485.3 393 57.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.3e-134 483.8 399 57.4
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.7e-134 483.4 399 58.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.7e-134 482.3 399 57.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 3.7e-134 482.3 399 57.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 8.3e-134 481.1 402 58.5
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-133 480.7 408 57.1
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.2e-133 479.2 395 56.7
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.1e-133 478.8 399 57.1
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 7.0e-133 478.0 397 56.9
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 9.2e-133 477.6 417 56.4
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.6e-132 476.9 388 57.5
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.5e-132 475.7 391 58.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.5e-132 475.7 384 57.6
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.5e-132 475.7 384 57.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 6.0e-132 474.9 388 57.5
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 3.0e-131 472.6 416 54.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 6.6e-131 471.5 392 56.4
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.1e-130 470.7 392 57.1
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.9e-130 469.9 393 55.7
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 7.3e-130 468.0 384 58.1
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.2e-129 467.2 384 56.8
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.6e-129 466.8 397 57.2
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-128 463.8 378 57.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-128 463.8 378 57.9
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.7e-126 456.8 391 54.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.7e-126 456.8 404 55.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.1e-125 452.2 403 54.1
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 2.7e-124 449.5 397 56.4
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.6e-124 448.7 412 55.3
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 2.1e-121 439.9 384 54.4
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.0e-115 419.5 405 50.6
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.9e-114 416.8 406 50.0
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 3.6e-113 412.5 411 50.6
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.8e-112 410.2 386 51.0
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 7.1e-109 398.3 400 51.2
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 9.3e-109 397.9 399 51.1
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.1e-108 396.7 396 52.3
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.3e-105 387.5 400 51.2
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.8e-104 383.6 381 52.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 3.4e-103 379.4 389 50.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 9.3e-101 371.3 405 46.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 3.0e-99 366.3 411 45.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 8.4e-94 348.2 411 42.6
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.0e-91 339.7 400 46.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.3e-89 334.3 396 44.9
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.1e-85 318.5 394 45.2
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 6.7e-83 312.0 403 44.2
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.9e-82 310.5 397 45.1
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.1e-74 284.6 282 50.7
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.3e-73 278.9 249 53.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 5.3e-72 275.8 391 40.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.2e-70 270.4 403 39.5
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 5.7e-66 255.8 403 40.7
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.9e-59 233.0 229 50.7
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 5.2e-59 232.6 184 58.2
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.8e-54 216.5 157 60.5
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.8e-54 216.5 422 33.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 2.7e-47 193.7 119 76.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.8e-40 171.0 156 54.5
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 8.8e-35 152.1 126 63.5
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.8e-31 139.0 386 26.4
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 5.7e-26 122.9 78 73.1
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.7e-23 114.0 320 26.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 5.0e-22 109.8 408 26.2
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.8e-10 69.7 45 71.1
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.9e-09 67.4 47 59.6
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 6.0e-07 59.7 43 69.8
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 3.0e-06 57.4 399 22.8


User provided reference genes

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