Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.4e-47 192.6 96 100.0
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.2e-30 136.3 67 97.0
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.2e-30 136.3 80 85.0
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.2e-19 97.4 81 58.0
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.9e-18 93.6 80 58.8
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.0e-17 92.4 81 56.8
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 2.0e-17 92.4 66 63.6
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.4e-17 91.7 81 55.6
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.8e-17 90.9 70 58.6
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 9.9e-17 90.1 80 53.8
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.3e-16 89.7 67 62.7
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.9e-16 88.6 80 55.0
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.9e-16 88.6 63 63.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 3.7e-16 88.2 80 53.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.7e-16 88.2 74 55.4
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 1.1e-15 86.7 81 53.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.1e-15 86.7 80 53.8
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.4e-15 86.3 81 56.8
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.4e-15 86.3 63 61.9
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.4e-15 86.3 81 53.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.9e-15 85.9 66 63.6
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.9e-15 85.9 80 53.8
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 3.2e-15 85.1 80 51.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 3.2e-15 85.1 80 53.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 4.1e-15 84.7 74 52.7
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.1e-15 84.7 80 50.0
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 4.1e-15 84.7 80 51.2
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.1e-15 84.7 76 50.0
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.4e-15 84.3 80 51.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.4e-15 84.3 80 51.2
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.4e-15 84.3 64 59.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 5.4e-15 84.3 80 50.0
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 9.2e-15 83.6 66 59.1
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.1e-14 82.4 80 50.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.5e-14 81.6 60 61.7
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 6.0e-14 80.9 66 56.1
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 7.8e-14 80.5 63 61.9
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.8e-14 80.5 80 51.2
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 7.8e-14 80.5 80 51.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.0e-13 80.1 80 48.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.0e-13 80.1 64 50.0
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.3e-13 79.7 63 57.1
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.3e-13 79.7 79 49.4
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.3e-13 79.7 80 50.0
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.3e-13 79.7 59 61.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 1.7e-13 79.3 74 51.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.3e-13 79.0 66 56.1
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.3e-13 79.0 80 51.2
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 3.0e-13 78.6 78 48.7
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.9e-13 78.2 80 47.5
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.6e-13 77.4 80 47.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 6.6e-13 77.4 78 52.6
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 6.6e-13 77.4 61 55.7
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.1e-12 76.6 70 52.9
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.1e-12 76.6 61 60.7
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.5e-12 76.3 63 58.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.5e-12 76.3 81 49.4
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.5e-12 75.5 78 50.0
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.5e-12 75.5 80 47.5
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.3e-12 75.1 66 59.1
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 3.3e-12 75.1 81 48.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.3e-12 75.1 80 47.5
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.3e-12 75.1 80 48.8
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 4.3e-12 74.7 80 48.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.3e-12 74.7 66 54.5
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.6e-12 74.3 66 56.1
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 5.6e-12 74.3 80 45.0
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 5.6e-12 74.3 80 46.2
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 9.6e-12 73.6 70 47.1
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.2e-11 73.2 66 50.0
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.1e-11 72.4 79 45.6
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.1e-11 72.4 63 55.6
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 4.7e-11 71.2 75 38.7
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 6.2e-11 70.9 79 45.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 6.2e-11 70.9 63 47.6
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 8.1e-11 70.5 67 52.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 8.1e-11 70.5 66 51.5
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.1e-11 70.5 80 47.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.4e-10 69.7 57 54.4
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.8e-10 69.3 63 49.2
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-10 69.3 63 47.6
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 2.4e-10 68.9 77 45.5
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.4e-10 68.9 80 47.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.4e-10 68.9 63 50.8
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.4e-10 68.9 66 48.5
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 3.1e-10 68.6 68 47.1
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 3.1e-10 68.6 66 47.0
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.0e-10 68.2 60 51.7
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 5.2e-10 67.8 69 50.7
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 5.2e-10 67.8 64 48.4
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 8.9e-10 67.0 68 51.5
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 8.9e-10 67.0 65 49.2
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 8.9e-10 67.0 64 48.4
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 8.9e-10 67.0 80 47.5
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 8.9e-10 67.0 67 49.3
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.0e-09 65.9 61 49.2
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.0e-09 65.9 64 46.9
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 2.6e-09 65.5 64 45.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 2.6e-09 65.5 73 43.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.4e-09 65.1 66 45.5
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 3.4e-09 65.1 66 45.5
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 4.4e-09 64.7 66 47.0
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 4.4e-09 64.7 50 58.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 7.6e-09 63.9 63 50.8
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 9.9e-09 63.5 79 44.3
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 4.9e-08 61.2 67 43.3
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 4.9e-08 61.2 67 43.3
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-07 60.1 67 44.8
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.1e-07 60.1 67 44.8
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.1e-07 60.1 67 44.8
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.2e-07 58.5 49 49.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 7.1e-07 57.4 61 44.3
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.7e-06 55.5 63 41.3


User provided reference genes

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