Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 3.7e-182 641.3 311 100.0
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.9e-157 559.3 306 90.8
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 2.4e-149 532.3 306 86.3
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 2.7e-148 528.9 306 84.3
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 7.8e-148 527.3 306 84.0
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 1.7e-147 526.2 306 84.0
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 1.7e-147 526.2 306 84.0
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 3.0e-147 525.4 306 84.0
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 3.0e-147 525.4 306 85.3
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 5.1e-147 524.6 306 83.7
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 6.6e-147 524.2 306 84.6
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 6.6e-147 524.2 303 84.8
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 8.7e-147 523.9 306 83.3
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.5e-146 522.3 306 83.7
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.5e-146 522.3 306 82.7
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 3.3e-146 521.9 306 83.0
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.3e-146 521.5 306 83.3
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.3e-146 521.5 306 83.3
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 7.3e-146 520.8 306 83.3
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 9.6e-146 520.4 306 83.7
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.6e-145 519.6 306 83.3
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 2.1e-145 519.2 302 83.4
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 2.8e-145 518.8 306 83.0
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 2.8e-145 518.8 306 82.4
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 2.8e-145 518.8 306 83.7
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 3.6e-145 518.5 306 83.7
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 3.6e-145 518.5 304 83.6
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 6.2e-145 517.7 302 83.4
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 6.2e-145 517.7 306 82.4
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 6.2e-145 517.7 306 83.7
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 6.2e-145 517.7 304 82.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 8.1e-145 517.3 306 84.0
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 8.1e-145 517.3 306 82.7
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.4e-144 516.5 302 83.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.8e-144 516.2 306 82.7
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.8e-144 516.2 306 82.7
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.8e-144 516.2 306 82.7
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.8e-144 516.2 306 83.0
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 2.4e-144 515.8 306 82.7
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.4e-144 515.8 306 82.7
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 2.4e-144 515.8 306 82.7
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 2.4e-144 515.8 302 83.1
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 3.1e-144 515.4 302 83.1
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 3.1e-144 515.4 306 82.4
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 5.3e-144 514.6 306 82.0
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.9e-144 514.2 306 82.0
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 6.9e-144 514.2 306 82.0
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.2e-143 513.5 307 82.7
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 1.2e-143 513.5 302 83.1
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.0e-143 512.7 302 83.1
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 2.0e-143 512.7 309 82.2
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 2.6e-143 512.3 302 83.4
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.6e-143 512.3 302 83.4
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 2.6e-143 512.3 307 82.7
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 2.6e-143 512.3 306 82.4
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 3.4e-143 511.9 302 82.5
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 3.4e-143 511.9 302 82.1
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 3.4e-143 511.9 306 81.7
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 4.4e-143 511.5 302 82.1
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 4.4e-143 511.5 306 82.0
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 4.4e-143 511.5 306 82.7
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 5.8e-143 511.1 302 82.1
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 5.8e-143 511.1 302 82.5
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 5.8e-143 511.1 306 81.7
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 5.8e-143 511.1 298 83.2
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 7.6e-143 510.8 302 82.1
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 7.6e-143 510.8 302 82.1
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 7.6e-143 510.8 340 77.1
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 9.9e-143 510.4 302 81.8
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 9.9e-143 510.4 302 82.1
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 9.9e-143 510.4 302 82.1
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 9.9e-143 510.4 302 82.1
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 9.9e-143 510.4 300 83.0
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 9.9e-143 510.4 307 83.1
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.3e-142 510.0 302 81.8
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.3e-142 510.0 302 81.8
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.3e-142 510.0 302 81.8
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.3e-142 510.0 302 81.8
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 1.3e-142 510.0 302 81.8
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.3e-142 510.0 306 81.4
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.3e-142 510.0 306 82.4
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 2.2e-142 509.2 306 80.7
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 2.9e-142 508.8 302 82.1
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 3.8e-142 508.4 298 83.9
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.8e-142 508.4 302 81.8
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.8e-142 508.4 306 82.0
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 4.9e-142 508.1 302 81.8
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 4.9e-142 508.1 302 82.5
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 6.4e-142 507.7 302 81.8
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 8.4e-142 507.3 302 81.8
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 8.4e-142 507.3 303 83.2
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 8.4e-142 507.3 306 81.7
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 8.4e-142 507.3 300 81.3
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 1.1e-141 506.9 302 82.8
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 1.1e-141 506.9 302 82.8
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.1e-141 506.9 300 81.7
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.9e-141 506.1 302 81.5
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 2.4e-141 505.8 306 81.7
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 2.4e-141 505.8 306 81.7
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 2.4e-141 505.8 298 82.2
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 4.2e-141 505.0 306 82.4
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 4.2e-141 505.0 306 82.4
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 5.4e-141 504.6 302 81.1
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 7.1e-141 504.2 302 80.5
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 7.1e-141 504.2 302 80.8
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 1.2e-140 503.4 306 81.0
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.6e-140 503.1 297 82.5
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 2.1e-140 502.7 306 80.7
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.1e-140 502.7 306 82.0
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 2.7e-140 502.3 295 82.7
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.5e-140 501.9 298 82.9
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.3e-139 500.0 303 79.9
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 1.3e-139 500.0 322 78.6
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 3.0e-139 498.8 302 81.1
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 8.7e-139 497.3 302 80.1
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.5e-138 496.5 306 80.4
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 3.3e-138 495.4 302 79.5
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 7.3e-138 494.2 334 75.7
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 7.6e-135 484.2 301 79.1
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 2.9e-134 482.3 304 76.3
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.8e-134 481.9 307 77.5
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.8e-134 481.9 307 77.5
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 4.9e-134 481.5 307 77.5
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 4.9e-134 481.5 326 74.2
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 3.2e-133 478.8 307 77.2
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.2e-132 476.9 296 78.7
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 7.9e-132 474.2 295 79.3
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 8.7e-131 470.7 302 73.5
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 2.5e-130 469.2 323 73.7
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 1.6e-129 466.5 295 75.3
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 5.3e-128 461.5 303 73.3
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 9.0e-128 460.7 295 76.3
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 4.5e-127 458.4 305 73.1
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 7.6e-127 457.6 295 73.9
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.0e-126 457.2 305 72.8
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.2e-126 456.1 294 71.8
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 1.1e-125 453.8 295 73.6
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.4e-125 453.4 301 76.1
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 4.2e-125 451.8 295 73.2
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 5.5e-125 451.4 300 71.3
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 2.1e-124 449.5 300 71.0
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 2.7e-124 449.1 295 73.2
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 2.7e-124 449.1 294 73.5
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 4.6e-124 448.4 306 74.8
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 6.0e-124 448.0 295 73.2
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 6.0e-124 448.0 295 72.9
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 3.0e-123 445.7 295 71.9
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 8.7e-123 444.1 306 70.3
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 1.7e-118 429.9 297 70.7
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 2.5e-117 426.0 294 69.7
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 5.1e-115 418.3 288 70.5
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.1e-109 400.6 306 70.3
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 7.9e-108 394.4 301 63.5
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 3.9e-107 392.1 299 64.5
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 2.7e-100 369.4 234 77.8
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 4.1e-96 355.5 297 64.0
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.1e-93 347.4 201 84.1
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 1.8e-88 330.1 197 79.7
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.5e-87 325.9 193 81.3
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 8.5e-86 321.2 174 86.2
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 7.0e-64 248.4 169 75.7
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 3.5e-55 219.5 181 66.3
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 4.7e-52 209.1 120 85.8
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 4.6e-47 192.6 291 39.9
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 2.3e-46 190.3 203 55.2
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 1.1e-45 188.0 121 73.6
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 3.3e-37 159.8 181 52.5
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.3e-30 137.9 83 85.5
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.8e-28 130.2 294 33.7
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 4.4e-26 122.9 83 75.9
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 4.4e-26 122.9 76 80.3
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 3.4e-18 96.7 52 90.4
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 3.4e-18 96.7 52 90.4
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 8.4e-17 92.0 48 91.7
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 6.7e-14 82.4 47 78.7
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.5e-13 81.3 49 85.7
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 1.6e-12 77.8 37 94.6
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.0e-11 73.2 39 89.7
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 7.1e-08 62.4 43 74.4


User provided reference genes

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